TABLE 1

Putative identifications of Neurospora cDNAs.
Classification was done according to Nelson and coworkers (Nelson et al. 1997). Only those sequences with BLASTX P/E values of 10-5 or lower (highly or moderately significant) are reported in this table. This table does not contain matches to ribosomal proteins or unidentified open reading frames. Information about these categories will be made available in an extended version of this table on our web pages http://www.genome.ou.edu/fungal.html and http://www.dartmouth.edu/~jdunlap/

Clone/contig IDa

P/E value

Homolog identified with BLASTX

I. Cell Division

DNA Synthesis/Replication

336

2E-70

gb|AAB94861.1| (AF014813) DNA replication licensing factor

a5h06ne

9E-34

sp|Q04832|HEXP_LEIMA DNA-BINDING PROTEIN HEXBP

764

2E-18

sp|Q09184|CDB4_SCHPO CURVED DNA-BINDING PROTEIN

h3c03ne

2E-45

sp|Q03392|PCNA_SCHPO PROLIFERATING CELL NUCLEAR ANTIGEN

69

3E-15

pir||T39841 topisomerase II associated protein pat1 homolog

958

1E-12

pir||T08729 RING zinc finger protein homolog

Cell Cycle

176

5E-09

dbj|BAB01955.1| (AP002059) contains similarity to AAA-type ATPase

a8b07ne

3E-17

gi|539092|pir||S38033 cell division control protein SLY2 homolog YKL196c

c8g11ne

6E-09

gi|7490204|pir||T39220 cell cycle regulator p21

1097

3E-47

pir||T39991 cell division control protein 47 homolog

a1b07ne

2E-41

emb|CAB76268.1| (AL158056) putative prohibitin

g2b12ne

4E-20

ref|NP_011747.1|| mitochondrial protein, prohibitin homolog

Apoptosis

1076

2E-18

ref|NP_035181.1|| programmed cell death 6

Chromosome Structure

271

9E-69

sp|O43102|CBF5_ASPFU CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5

171

9E-18

emb|CAB72936.1| (AJ011780) histone H1

915

1E-65

emb|CAB91279.1| (AL355927) probable suppressor protein of mitochondrial histone mutant [Neurospora crassa]

1093

2E-39

sp|P04914|H4_NEUCR HISTONE H4

1408

2E-69

sp|P07041|H3_NEUCR HISTONE H3

1300

5E-46

sp|P08844|H2A_EMENI HISTONE H2A

850

1E-50

sp|P23754|H2B_EMENI HISTONE H2B

662

4E-08

pir||T41330 nucleosome assembly protein

II. Cell Signaling/Cell Communication

Channels/Transport Proteins

c2b04nm

3E-08

gb|AAD56389.1|AF182216_1 (AF182216) chloride channel CLC-5

808

E-153

gb|AAD45253.1| (AF135863) opsin-1 [Neurospora crassa]

c5d12ne

4E-43

pir||T41659 probable potassium channel subunit

Effectors/Modulators

1040

5E-25

emb|CAA62150.1| (X90560) Calmodulin

1317

2E-80

sp|Q02052|CALM_NEUCR CALMODULIN

Intracellular Transducers

698

1E-58

sp|P34727|ARF_AJECA ADP-RIBOSYLATION FACTOR

835

0.00001

emb|CAA72985.1| (Y12314) GTPase

673

4E-25

gb|AAF78478.1|AF190700_1 (AF190700) small G-protein Gsp1p

827

2E-38

gi|729566|sp|P39958|GDI1_YEAST SECRETORY PATHWAY GDP DISSOCIATION INHIBITOR

1043

2E-09

pir||T11657 rho GDP dissociation inhibitor

706

3E-08

sp|P28748|SPI1_SCHPO GTP-BINDING NUCLEAR PROTEIN SPI1

475

E-155

sp|Q01369|GBLP_NEUCR GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN

h7b01ne

7E-55

dbj|BAA32410.1| (AB000281) krev-1 [Neurospora crassa]

335

2E-37

sp|P36586|YPT5_SCHPO YPT1-RELATED PROTEIN 5

Protein Modification

1228

1E-84

dbj|BAA89421.1| (AB029307) 14-3-3

c3f08ne

2E-81

emb|CAC03748.1| (AJ290951) cAMP-dependent protein kinase catalytic subunit

a1e12ne

1E-39

gb|AAD02822.1| (AF069777) mitogen-activated protein kinase kinase CPK1

a3d09ne

1E-38

gb|AAD50496.1|AF174649_1 (AF174649) mitogen activated protein kinase

c1g06ne

1E-13

pir||T37758 protein kinase skp1p

a2b11ne

2E-08

sp|P22987|KIN1_SCHPO PROTEIN KINASE KIN1

711

3E-88

sp|P87253|KPC1_NEUCR PROTEIN KINASE C-LIKE

652

5E-18

pir||T37742 serine threonine-protein kinase

c4d10ne

3E-21

ref|NP_012651.1|| zinc metallo-protease that catalyzes the first step of N-terminal

III. Cell Structure/Cytoskeleton

Cell Wall

1066

1E-24

emb|CAA09585.1| (AJ011296) putative cell wall protein

1368

4E-44

ref|NP_011487.1|| soluble cell wall protein; Scw11p

504

0.00001

ref|NP_014035.1|| soluble cell wall protein; Scw10p

484

E-121

gb|AAF00101.1|AF127086_1 (AF127086) chitin synthase 3 [Neurospora crassa]

1128

1E-24

sp|P29070|CHS3_NEUCR CHITIN SYNTHASE 3

296

3E-48

sp|Q92357|CHS5_SCHPO PROBABLE CHITIN BIOSYNTHESIS PROTEIN

Cytoskeleton

a4a04ne

1E-16

emb|CAB66436.1| (AL136535) actin-related protein

1074

8E-48

gi|7492405|pir||T39044 probable Arp2-3 complex subunit

1271

5E-92

sp|P78711|ACT_NEUCR ACTIN

1147

5E-70

emb|CAB91201.1| (AL355925) cofilin related protein [Neurospora crassa]

1102

2E-68

gb|AAC99460.1| (AF102992) kinesin related protein 1

a1d07ne

3E-06

pir||A56511 myosin I myoA

181

4E-25

pir||T38774 myosin-3 isoform, heavy chain (Type II myosin)

f5f09nm

8E-24

emb|CAB93844.1| (AL358272) similar to yeast nuclear segregation protein Bfr1

b9f02ne

1E-09

sp|P39825|PROF_SCHPO PROFILIN

590

1E-17

gi|482158|pir||S40911 septin CDC11

193

2E-36

sp|P38669|TBA2_NEUCR TUBULIN ALPHA-B CHAIN

836

4E-13

sp|Q02088|TPM_SCHPO TROPOMYOSIN

Motility

411

5E-46

ref|NP_009517.1|| Homolog to twitching motility protein

IV. Cell/Organism Defense

Carrier proteins/Membrane Transport

1246

1E-47

dbj|BAA33011.1| (AB016807) flavohemoglobin [Fusarium oxysporum]

Detoxification

1119

3E-80

gb|AAF66098.1|AF192405_1 (AF192405) putative cyanide hydratase

100

2E-76

gb|AAF85031.1|AE004035_10 (AE004035) catalase/peroxidase

968

1E-39

sp|P23622|CY14_NEUCR SULFATE PERMEASE II

b4a10ne

4E-39

sp|Q02068|NRL1_RHORH ALIPHATIC NITRILASE

a7c03ne

6E-34

pir||S25198 vacuolar membrane protein HMT1

1172

7E-31

sp|P32962|NRL2_ARATH NITRILASE 2

d8a09ne

1E-15

dbj|BAA22793.1| (AB007905) Cad1 protein

34

2E-06

ref|NP_014140.1|| Putative copper binding/homeostasis protein; Atx1p

1295

E-176

emb|CAC03570.1| (AJ297565) CyPBP37 protein [Neurospora crassa]

807

2E-75

pir||T18224 rehydrin protein homolog

964

1E-12

ref|NP_004519.1|| microsomal glutathione S-transferase 3

g9c08ne

7E-32

ref|NP_009602.1|| Homolog to quinone oxidoreductase

Stress Response

1340

1E-14

pir||T41531 activator of Hsp70 and Hsp90 chaperones

560

3E-65

pir||T40514 Chaperonin hsp78p - fission yeast

h6b03ne

5E-33

ref|NP_012598.1|| subunit of chaperonin subunit epsilon

1320

5E-14

emb|CAA06818.1| (AJ006023) peptidylprolyl isomerase [Neurospora crassa]

1392

1E-69

dbj|BAA34384.1| (AB019518) cyclophilin

1198

E-105

sp|P10255|CYPH_NEUCR PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PRECURSOR (CYCLOPHILIN)

h5d04ne

4E-18

sp|P87051|YDJ3_SCHPO PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE

1442

4E-85

sp|P00721|LYCH_CHASP N,O-DIACETYLMURAMIDASE (LYSOZYME CH)

1106

3E-78

emb|CAA70090.1| (Y08867) putative ER chaperone

c1d11ne

3E-43

sp|O60046|FK21_NEUCR FK506-BINDING PROTEIN PRECURSOR (FKBP-21)

1344

2E-64

sp|P20080|FKBP_NEUCR FK506-BINDING PROTEIN (FKBP)

769

8E-43

emb|CAA67431.1| (X98931) heat shock protein 70

583

5E-47

emb|CAB91199.1| (AL355925) probable heat-shock protein hsp60 [Neurospora crassa]

1381

E-150

gb|AAF34607.1| (AF212996) heat shock protein 80 [Neurospora crassa]

90

2E-50

sp|O43109|HS90_PODAN HEAT SHOCK PROTEIN 90 HOMOLOG

h4g11ne

3E-28

sp|O59804|CH10_SCHPO 10 KD HEAT SHOCK PROTEIN, MITOCHONDRIAL (HSP10)

505

9E-67

sp|P19752|HS30_NEUCR 30 KD HEAT SHOCK PROTEIN

1109

2E-96

sp|Q01233|HS70_NEUCR HEAT SHOCK 70 KD PROTEIN (HSP70)

a3e10ne

6E-29

gb|AAF70857.1|AF152925_1 (AF152925) PalC

823

4E-28

pir||T39892 probable prefoldin subunit

91

4E-13

ref|NP_014494.1|| Peroxisomal membrane protein; Pex11p

1187

2E-26

sp|O14313|PM20_SCHPO PEROXISOMAL MEMBRANE PROTEIN PMP20

791

1E-33

sp|O43099|PM20_ASPFU PROBABLE PEROXISOMAL MEMBRANE PROTEIN PMP20

117

2E-15

pir||T38661 stress response protein rds1p

b9c05ne

3E-44

sp|Q10147|TCPB_SCHPO PROBABLE T-COMPLEX PROTEIN 1, BETA SUBUNIT

1359

5E-71

emb|CAB92637.1| (AL356815) related to YRO2 protein [Neurospora crassa]

1044

0.00002

pir||T15174 hypothetical protein C48E7.3

309

E-107

emb|CAB97292.1| (AL389890) probable zuotin [Neurospora crassa]

V. Metabolism

Amino Acid

c6e12ne

2E-48

gb|AAB81248.1| (AF013601) acetolactate synthase

b3b10ne

0.00002

pir||G70806 probable acetolactate synthase

470

4E-44

pir||T39679 argininosuccinate lyase

38

1E-63

sp|P14010|GATA_EMENI 4-AMINOBUTYRATE AMINOTRANSFERASE

1037

1E-85

sp|P23623|OXLA_NEUCR L-AMINO ACID OXIDASE PRECURSOR

d4g05ne

5E-22

ref|NP_011980.1|| Cystathionine gamma-synthase; Yhr112cp

d9h02ne

2E-50

emb|CAA62973.1| (X91867) CPC3 protein [Neurospora crassa]

645

E-106

gb|AAB28355.1| (S66039) NAD(+)-specific glutamate dehydrogenase [Neuorspora crassa]

544

2E-61

pir||T41722 probable gamma-glutamyl phosphate reductase

889

5E-79

sp|Q12613|GLNA_COLGL GLUTAMINE SYNTHETASE

1007

3E-84

gi|2853023|gb|AAC02221.1| (AF045455) histidine-3 protein [Neurospora crassa]

266

1E-17

prf||2004294A beta isopropylmalate dehydrogenase [Neurospora crassa]

981

6E-34

sp|O59736|LEU1_SCHPO 2-ISOPROPYLMALATE SYNTHASE

16

1E-109

sp|P38674|ILV5_NEUCR KETOL-ACID REDUCTOISOMERASE PRECURSOR

1268

4E-70

pir||T40384 probable methionine aminopeptidase 1

408

2E-77

sp|P27121|DCOR_NEUCR ORNITHINE DECARBOXYLASE

133

1E-75

emb|CAB76044.1| (AL157918) ornithine aminotransferase

1254

5E-96

gb|AAF72527.1|AF252630_1 (AF252630) delta-1-pyrroline-5-carboxylate dehydrogenase

794

5E-74

gb|AAF72528.1|AF252631_1 (AF252631) proline oxidase

929

1E-17

gb|AAF86990.1|AF282249_9 (AF282249) ArcT

543

4E-25

pir||T40091 probable serine palmitoyltransferase

d2f10ne

2E-85

sp|P34898|GLYC_NEUCR SERINE HYDROXYMETHYLTRANSFERASE

616

1E-88

sp|P38997|LYS1_YARLI SACCHAROPINE DEHYDROGENASE

300

1E-74

sp|Q9Y8H7|SPEE_NEUCR SPERMIDINE SYNTHASE

1255

2E-07

sp|Q06087|TYD3_PETCR TYROSINE DECARBOXYLASE

Cofactors

865

2E-82

emb|CAB65619.1| (AL136078) putative GTP cyclohydrolase

1238

1E-08

emb|CAB85691.1| (AJ271697) riboflavin aldehyde-forming enzyme

557

8E-33

gb|AAA34529.1| (J03873) coproporphyrinogen oxidase (EC 1.3.3.3)

1208

E-112

gb|AAC64375.1| (U68718) thiamine synthase homolog

1161

E-103

gb|AAD49809.1|AF133101_1 (AF133101) PYROA

b1h01ne

5E-42

pir||T39218 pyridoxal reductase

990

5E-67

sp|P38681|NIR_NEUCR NITRITE REDUCTASE

482

2E-13

sp|P42882|NMT1_ASPPA NMT1 PROTEIN HOMOLOG

c4d09ne

3E-37

gb|AAD55372.1|AF148449_1 (AF148449) 6,7-dimethyl-8-ribityllumazine synthase

Energy/TCA Cycle

b1h03ne

7E-16

pir||E75296 aldo/keto reductase

143

E-107

emb|CAB88555.1| (AL353819) probable atp-specific succinyl-coa synthetase alpha

999

4E-47

gb|AAC61778.1| (AF093142) aconitase

a3h08ne

1E-26

gi|11r984|sp|P05202|AATM_MOUSE ASPARTATE AMINOTRANSFERASE

a8g05ne

6E-41

gi|1703228|sp|P52893|ALAM_YEAST PUTATIVE ALANINE AMINOTRANSFERASE

d5c02ne

1E-27

gi|1706382|sp|P47771|DHA5_YEAST ALDEHYDE DEHYDROGENASE

559

1E-19

gi|2688543|gb|AAC66974.1| (AE001163) acetate kinase

1003

8E-49

sp|O13349|ATPF_KLULA ATP SYNTHASE SUBUNIT 4

352

1E-31

sp|O13350|ATP7_KLULA ATP SYNTHASE D CHAIN, MITOCHONDRIAL

531

1E-07

sp|O13931|AT18_SCHPO PUTATIVE ATP SYNTHASE J CHAIN

1257

2E-63

sp|P00842|ATP9_NEUCR ATP SYNTHASE PROTEIN 9

984

E-107

sp|P23704|ATPB_NEUCR ATP SYNTHASE BETA CHAIN

1367

E-116

sp|P37211|ATPA_NEUCR ATP SYNTHASE ALPHA CHAIN

1269

3E-87

sp|P40108|DHAL_CLAHE ALDEHYDE DEHYDROGENASE

948

2E-70

sp|P56525|ATPD_NEUCR ATP SYNTHASE DELTA CHAIN

312

4E-83

sp|Q01355|AOX_NEUCR ALTERNATIVE OXIDASE PRECURSOR

1374

2E-07

gi|3913153|sp|P81449|ATPJ_YEAST ATP SYNTHASE E CHAIN

722

8E-52

ref|NP_010933.1|| ATP-dependent metalloprotease; Afg3p

322

9E-30

gb|AAB59549.1| (J04474) branched-chain alpha-keto acid dehydrogenase

688

2E-16

emb|CAB77626.1| (AJ251827) putative cytochrome B5 reductase

g9e10ne

1E-24

gi|399286|sp|Q01519|COXG_YEAST CYTOCHROME C OXIDASE

821

3E-24

pir||T41677 probable nadh-cytochrome b5 reductase

1155

5E-07

ref|NP_010216.1|| Subunit VIIa of cytochrome c oxidase; Cox9p

1275

2E-22

ref|NP_011918.1|| subunit VI of cytochrome c oxidase; Cox6p

a3a10ne

7E-26

ref|NP_013304.1|| involved in maturation of COX1 and COB mRNA; Mss51p

1019

1E-16

sp|O74471|COXE_SCHPO PROBABLE CYTOCHROME C OXIDASE POLYPEPTIDE VIA

1035

5E-60

sp|P00048|CYC_NEUCR CYTOCHROME C

b2a10nm

6E-91

sp|P00411|COX2_NEUCR CYTOCHROME C OXIDASE POLYPEPTIDE II

b9b12ne

2E-75

sp|P06810|COX5_NEUCR CYTOCHROME C OXIDASE POLYPEPTIDE V PRECURSOR

a6c07ne

3E-13

sp|P49096|CYB5_MUSDO CYTOCHROME B5

918

2E-77

sp|P78574|CATA_ASPFU CATALASE A

h8b02ne

1E-35

sp|Q00616|NOR1_CYLTO CYTOCHROME P450 55A2

a1c12ne

9E-25

gi|549725|sp|P36060|MCR1_YEAST NADH-CYTOCHROME B5 REDUCTASE PRECURSOR

496

2E-30

gb|AAA85778.1| (L41670) fumarylacetoacetate hydrolase

80

1E-07

gi|3873913|emb|CAA95783.1| (Z71258) similar to Flavin-binding monooxygenase-like

218

1E-37

pir||T00433 fumarate hydratase

g7a06ne

4E-33

pir||T37806 probable flavoprotein subunit

c4b01ne

4E-38

dbj|BAA86935.1| (AB029553) glutaminase A

1023

1E-56

emb|CAB88564.1| (AL353819) probable glutaredoxin [Neurospora crassa]

562

6E-33

emb|CAB92626.1| (AL356815) probable glutamate synthase (NADPH) [Neurospora crassa]

750

3E-75

emb|CAB62099.1| (AL133306) probable isocitrate dehydrogenase [nad] subunit 2

c6h06nm

5E-32

ref|NP_014779.1|| NAD+-dependent isocitrate dehydrogenase; Idh2p

995

5E-54

ref|NP_015190.1|| Iron-sulfur cluster nifU-like protein; Isu1p

525

9E-41

sp|Q12627|DLD1_KLULA D-LACTATE DEHYDROGENASE

1063

3E-48

emb|CAA76361.1| (Y16748) malate dehydrogenase

1318

E-121

gb|AAD28503.1|AF118809_1 (AF118809) manganese superoxide dismutase precursor [Neurospora crassa]

1176

3E-78

gb|AAF66995.1|AF062654_1 (AF062654) manganese superoxide dismutase

1204

E-118

gi|547901|sp|P17505|MDHM_YEAST MALATE DEHYDROGENASE

1140

5E-55

sp|P28345|MASY_NEUCR MALATE SYNTHASE, GLYOXYSOMAL

561

2E-23

dbj|BAA22375.1| (D86491) Nfrl

725

2E-23

emb|CAB91381.1| (AL355930) probable oligomycin sensitivity conferring protein (ATP5) [Neurospora crassa]

647

3E-13

pir||D72377 oxidoreductase, short chain dehydrogenase/reductase family

1330

2E-19

sp|P22009|PX18_CANTR OLEATE-INDUCED PEROXISOMAL PROTEIN POX18

123

7E-44

sp|Q10216|YAY8_SCHPO HYPOTHETICAL OXIDOREDUCTASE C4H3.08

a6h07ne

5E-25

emb|CAA04820.1| (AJ001540) phenylacetyl-CoA ligase

c1f09ne

2E-63

emb|CAB97287.1| (AL389890) probable pyruvate dehydrogenase (lipoamide) beta chain

1345

1E-26

gb|AAC08303.1| (AF021797) peroxisomal receptor for PTS2-containing proteins Pex7p

i8h02nm

3E-15

gb|AAC78141.1| (AF100985) phosphopyruvate hydratase

1056

6E-31

gi|2773203|gb|AAB96720.1| (AF039713) Similar to phosphoglycerate mutase

c6b09ne

1E-54

sp|P19117|IPYR_SCHPO INORGANIC PYROPHOSPHATASE

339

5E-80

sp|P11913|MPPB_NEUCR MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PRECURSOR

1226

1E-15

emb|CAB66444.1| (AL136535) putative succinate dehydrogenase membrane anchor subunit

371

3E-66

gi|1078403|pir||S57160 sulfite reductase homolog

641

4E-61

sp|O42772|DHSB_MYCGR SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN

368

5E-45

sp|P07509|SODC_NEUCR SUPEROXIDE DISMUTASE [CU-ZN]

539

2E-18

sp|P09367|SDHL_RAT L-SERINE DEHYDRATASE/L-THREONINE DEAMINASE

1397

3E-29

pir||T41575 ubiquinol-cytochrome c reductase complex subunit

e2d09ne

4E-72

p|P25284|NUEM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 40 KD SUBUNIT PRECURSOR

664

6E-57

sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.3 KDA SUBUNIT

542

3E-42

sp|P40915|NUHM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 24 KD SUBUNIT PRECURSOR

148

2E-68

sp|P42114|NB4M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 14.8 KD SUBUNIT

264

5E-42

sp|P48503|UCRQ_NEUCR ubiquinol-cytochrome c reductase complex ubiquinone-binding protein

161

2E-06

sp|Q02369|NI2M_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT

f9e02ne

2E-37

sp|Q02854|NUXM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 21 KD SUBUNIT

659

0.00001

sp|Q9UDW1|UCRX_HUMAN UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN

Lipid

1138

1E-10

emb|CAB75318.1| (AL139164) putative acetyltransferase

863

2E-10

gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain

1297

2E-47

gb|AAG05938.1|AE004683_2 (AE004683) probable acyl-CoA dehydrogenase

455

4E-35

gb|AAG06956.1|AE004777_9 (AE004777) probable acetyl-coa synthetase

1210

6E-57

pir||T39899 acetyl-coa acetyltransferase - fission yeast

631

E-140

emb|CAA12224.1| (AJ224922) ATP citrate lyase

191

2E-16

gi|1545805|dbj|BAA10929.1| (D64052) cytochrome P450

d5h09ne

5E-27

gi|1706683|sp|P53045|ER25_YEAST C-4 METHYL STEROL OXIDASE

1123

4E-08

pir||T02955 probable cytochrome P450 monooxygenase

796

2E-72

gb|AAD47296.1| (AF017140) dihydrolipoamide succinyltransferase

c5a02ne

7E-31

gi|1706682|sp|P32377|ER19_YEAST DIPHOSPHOMEVALONATE

51

1E-23

gb|AAF71293.1|AF262756_1 (AF262756) 14-a demethylase

885

1E-23

dbj|BAA82526.1| (AB030037) fatty acid omega-hydroxylase

a3c08ne

2E-06

emb|CAB89463.1| (AL354048) putative fatty acid synthase

c7c02ne

4E-14

pir||T06332 ferric leghemoglobin reductase isoenzyme 2 precursor

1177

5E-45

gb|AAF40140.1|AF208040_1 (AF208040) beta (1-3) glucanosyltransferase Gel3p

b6c02ne

5E-89

emb|CAB91699.1| (AL356172) probable hydroxymethylglutaryl-CoA synthase [Neurospora crassa]

a3b07nm

1E-31

sp|Q05493|THIK_YARLI 3-KETOACYL-COA THIOLASE, PEROXISOMAL PRECURSOR

a8e01ne

3E-27

sp|P32949|LIP5_CANRU LIPASE 5 PRECURSOR

1031

3E-45

gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precursor

c1d01nm

3E-43

gb|AAF04489.1|AF148505_1 (AF148505) methylmalonate-semialdehyde dehydrogenase

305

3E-56

sp|P52713|MMSA_CAEEL PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE

1072

2E-52

emb|CAB91484.1| (AL355933) probable oxoglutarate dehydrogenase precursor [Neurospora crassa]

a6a04ne

5E-40

emb|CAA04820.1| (AJ001540) phenylacetyl-CoA ligase

c5c09ne

7E-06

gb|AAD14518.1| (AC006200) putative phosphatidic acid phosphatase

1231

8E-85

gi|586339|sp|P38137|FAT2_YEAST PEROXISOMAL-COENZYME A SYNTHETASE

221

5E-40

pir||T40015 phosphatidylethanolamine methyltransferase

a9b09ne

0.00005

pir||T40445 phosphatidic acid phosphatase homolog

1252

3E-24

sp|P16387|ODPA_YEAST PYRUVATE DEHYDROGENASE E1 COMPONENT ALPHA SUBUNIT

46

5E-70

emb|CAB92021.1| (AL356324) probable beta-succinyl CoA synthetase precursor

236

1E-72

emb|CAB97289.1| (AL389890) probable DELTA(24)-STEROL C-METHYLTRANSFERASE (ERG6) [Neurospora crassa]

363

3E-85

pir||S52745 stearoyl-CoA desaturase

668

6E-34

sp|O13750|SUCA_SCHPO PROBABLE SUCCINYL-COA LIGASE [GDP-FORMING] ALPHA-CHAIN

40

5E-49

sp|Q92206|ERG1_CANAL SQUALENE MONOOXYGENASE

d4f06ne

9E-11

pir||E71406 probable carnitine racemase

Nucleotide

767

1E-10

gi|1709915|sp|P38009|PU92_YEAST BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN ADE17

g4c01ne

1E-66

emb|CAB88595.1| (AL353820) ankyrin repeat-containing YAR1 related protein

636

2E-06

gi|137110|sp|P27515|URK1_YEAST URIDINE KINASE

1131

9E-58

sp|Q00511|URIC_ASPFL URICASE

1143

4E-85

sp|Q9UUY8|NDK_NEUCR NUCLEOSIDE DIPHOSPHATE KINASE

14

4E-53

ref|NP_009409.1|| phosphoribosyl amino imidazolesuccinocarbozamide synthetase; Ade1p

Sugar/Glycolysis

1283

E-148

emb|CAB91241.1| (AL355926) ALCOHOL DEHYDROGENASE I-ADH1 [Neurospora crassa]

939

1E-24

gb|AAB71082.1| (U66411) putative type III alcohol dehydrogenase

223

9E-14

pir||F69905 probable alcohol dehydrogenase (EC 1.1.1.-) yogA

818

1E-33

pir||T39671 alcohol dehydrogenase - fission yeast

578

6E-11

sp|P26612|AMY2_ECOLI CYTOPLASMIC ALPHA-AMYLASE

98

3E-57

emb|CAA60825.1| (X87371) carbamyl phosphate synthetase

928

E-137

emb|CAB99175.1| (AL390189) probable dolichyl-phosphate-mannose--protein mannosyltransferase [Neurospora crassa]

407

4E-41

gb|AAD30975.1|AF121895_1 (AF121895) dolichol-phosphate-mannose synthase

340

3E-12

gb|AAF01464.1|AF189370_1 (AF189370) dolichyl-phosphate beta-glucosyltransferase

1402

5E-22

pir||T41540 probable short chain dehydrogenase

612

2E-23

ref|NP_003850.1|| dolichyl-phosphate mannosyltransferase polypeptide 1

501

2E-61

sp|P42040|ENO_CLAHE ENOLASE

1115

2E-71

sp|P53444|ALF_NEUCR FRUCTOSE-BISPHOSPHATE ALDOLASE

1321

7E-45

emb|CAB60235.1| (AL132828) putative glycosyltransferase

963

3E-81

emb|CAB91426.1| (AL355932) glucan 1, 4-alpha-glucosidase [Neurospora crassa]

607

1E-66

gb|AAF17102.1|AF208225_2 (AF208225) alpha-glucosidase AgdA

c1c06ne

2E-15

pir||T35164 probable secreted glucosidase

262

8E-17

ref|NP_009574.1|| galactose-1-phosphate uridyl transferase; Gal7p

1448

9E-177

sp|P54118| glyceraldehyde-3-phosphate dehydrogenase (ccg-7) [Neurospora crassa]

1135

2E-64

emb|CAA28273.1| (X04604) glycogen phosphorylase

472

6E-44

ref|NP_015486.1|| Glycogen phosphorylase; Gph1p

b9e11ne

4E-29

ref|NP_034424.1|| glucokinase activity, related sequence 2

1310

E-13

sp|Q92407|HXKG_ASPNG GLUCOKINASE

1069

6E-17

pir||T39569 probable alpha-glucan synthase

874

2E-25

emb|CAA08922.1| (AJ009973) hexokinase

310

3E-15

emb|CAB75871.1| (AL157811) 2-hydroxyacid dehydrogenase

57

8E-17

gb|AAB63461.1| (AF009036) NAD(+)-isocitrate dehydrogenase subunit I

281

8E-70

sp|P79089|IDHP_ASPNG ISOCITRATE DEHYDROGENASE [NADP], MITOCHONDRIAL PRECURSOR

699

6E-39

pir||S63701 mannosyl-oligosaccharide 1,2-alpha-mannosidase precursor

12

7E-46

ref|NP_009758.1|| Putative alpha-1,2-mannosyltransferase; Ktr4p

902

3E-75

sp|P28345|MASY_NEUCR MALATE SYNTHASE, GLYOXYSOMAL

327

2E-27

sp|P11178|ODBA_BOVIN 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT

841

E-111

gb|AAF36531.1|AF135264_1 (AF135264) phosphoglucomutase

1199

1E-32

ref|NP_011105.1|| alpha subunit of pyruvate dehydrogenase

1382

5E-66

sp|O13434|PPCK_CANAL PHOSPHOENOLPYRUVATE CARBOXYKINASE

1151

5E-72

sp|P31865|KPYK_TRIRE PYRUVATE KINASE

1423

5E-219

sp|P38667|PGK_NEUCR PHOSPHOGLYCERATE KINASE

h3a05ne

7E-31

gi|1173139|sp|P46969|RPE_YEAST RIBULOSE-PHOSPHATE 3-EPIMERASE

248

5E-66

dbj|BAA13834.1| (D89172) similar to transketolase 2

790

6E-40

dbj|BAA24182.1| (AB010049) transaldolase

261

1E-42

emb|CAA45835.1| (X64537) triosephosphate isomerase

a8e10ne

7E-12

gb|AAF61430.1|AF136944_1 (AF136944) trehalase

245

6E-10

pir||T18231 transketolase I

901

1E-23

sp|O42622|TREB_MAGGR NEUTRAL TREHALASE

c6f01ne

7E-58

sp|P78811|UDPG_SCHPO PROBABLE UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE

Transport

308

8E-31

gi|130720|sp|P23968|VATO_YEAST VACUOLAR ATP SYNTHASE 22 KD PROTEOLIPID SUBUNIT

477

2E-17

pir||T39088 probable vacuolar h(+)-atpase subunit

a5h12ne

5E-23

sp|O94270|ERD2_SCHPO ER LUMEN PROTEIN RETAINING RECEPTOR

777

1E-73

sp|P02723|ADT_NEUCR ADP,ATP CARRIER PROTEIN

974

3E-49

sp|P11943|ACPM_NEUCR ACYL CARRIER PROTEIN

200

4E-52

sp|P31413|VATL_NEUCR VACUOLAR ATP SYNTHASE 16 KD PROTEOLIPID SUBUNIT

g2d08ne

7E-88

sp|P53659|VATX_NEUCR VACUOLAR ATP SYNTHASE SUBUNIT AC39

h6g06ne

2E-59

sp|Q01290|VPH1_NEUCR VACUOLAR ATP SYNTHASE 98 KD SUBUNIT

524

2E-42

sp|Q99128|ADG_USTMA GAMMA-ADAPTIN

153

5E-10

sp|P78713|VATG_NEUCR VACUOLAR ATP SYNTHASE SUBUNIT G

i4h12nm

2E-55

pir||S44066 H+-transporting ATP synthase (EC 3.6.1.34) protein 6

a3c11ne

1E-95

emb|CAB65295.1| (AJ243517) putative calcium P-type ATPase [Neurospora crassa]

a7c10ne

6E-32

emb|CAB88550.1| (AL353819) related to carboxylic acid transport protein JEN1

564

3E-07

ref|NP_013515.1|| Copper Transporter; Ctr3p

412

1E-14

emb|CAB76027.1| (AL157917) ap-1 golgi-associated clathrin assembly protein

1429

E-101

gb|AAF78478.1|AF190700_1 (AF190700) small G-protein Gsp1p

e4c08ne

2E-43

gi|549795|sp|P36017|YP51_YEAST GTP-BINDING PROTEIN YPT51/VPS21

1266

3E-12

pir||T41464 probable Golgi membrane protein

c4a06ne

3E-27

sp|O74713|HGT1_CANAL HIGH-AFFINITY GLUCOSE TRANSPORTER

1058

1E-57

sp|P78695|GR78_NEUCR 78 KDA GLUCOSE-REGULATED PROTEIN HOMOLOG

1357

7E-14

gi|3183036|sp|Q06142|IMB1_YEAST IMPORTIN BETA-1 SUBUNIT

113

2E-09

emb|CAB64692.1| (Y18127) kexin precursor

978

8E-27

emb|CAB99236.1| (AL390218) related to myo-inositol transport protein ITR1

214

3E-75

emb|CAC04445.1| (AL391572) probable 2-oxoglutarate/malate translocator [Neurospora crassa]

251

1E-40

gb|AAA33597.1| (J05484) matrix processing peptidase [Neurospora crassa]

140

1E-39

pir||T40336 probable MSF transporter - fission yeast

b4c06ne

4E-08

ref|NP_012608.1|| nuclear protein that interacts with GTP-Gsp1p; Mog1p

426

2E-81

sp|P07144|PORI_NEUCR OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN

74

1E-62

sp|P18696|PUTX_EMENI PROLINE-SPECIFIC PERMEASE

431

5E-67

sp|Q01294|CARP_NEUCR VACUOLAR PROTEASE A PRECURSOR

588

3E-31

pir||T39672 ran-spi1 binding protein - fission yeast

1375

1E-66

sp|Q92253|RCO3_NEUCR PROBABLE GLUCOSE TRANSPORTER RCO-3

1436

9E-46

emb|CAB75124.1| (AL139075) putative sugar transporter

c4c09ne

2E-21

gb|AAA57229.1| (L07492) sugar transport protein

263

E-141

gb|AAF72704.1|AF262964_1 (AF262964) putative SNARE protein; SYN [Neurospora crassa]

b8e07ne

6E-17

pir||T12065 endoplasmic reticulum insertion protein SEC61

a7a05ne

3E-21

pir||T40448 translocation protein SEC66 homolog

c5e10ne

8E-07

pir||T40841 secretory pathway protein

c6b12ne

4E-06

pir||T41469 probable secretory protein

104

5E-26

ref|NP_003974.1|| solute carrier family 7 (cationic amino acid transporter)

604

8E-07

ref|NP_013657.1|| subunit of signal peptidase complex

1303

2E-20

sp|Q09827|S61G_SCHPO PUTATIVE PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT

a5d01ne

5E-31

sp|Q10137|SC14_SCHPO PUTATIVE SEC14 CYTOSOLIC FACTOR

a5d12ne

2E-58

emb|CAB91213.1| (AL355925) syntaxin 8 related protein [Neurospora crassa]

g9g11ne

0.00001

emb|CAB83151.1| (AL162691) transporter-like protein

1412

2E-85

gb|AAB61278.1| (AF001033) putative 20kDa subunit of the V-ATPase [Neurospora crassa]

895

3E-31

ref|NP_015260.1|| involved in vacuolar protein targeting; Vps28p

1183

1E-33

ref|NP_011259.1|| high-affinity zinc transport protein; Zrt1p

VI. Protein Synthesis

Post-translational Modification/Targeting

235

4E-29

emb|CAB92410.1| (AJ011990) calreticulin-like protein

d2h03ne

7E-23

dbj|BAB11922.1| (AB038362) esterase D

1362

3E-17

pir||T35294 probable endo alpha-1,4 polygalactosaminidase

150

0.00003

ref|NP_014732.1|| small GTP-binding protein; geranylgeranylated

471

4E-23

sp|P55059|PDI_HUMIN PROTEIN DISULFIDE ISOMERASE PRECURSOR

596

3E-36

sp|Q92249|ER38_NEUCR PUTATIVE DISULFIDE ISOMERASE ERP38

138

3E-39

emb|CAB75415.1| (AL139314) ubiquitin conjugating enzyme

1201

8E-64

gb|AAA56880.1| (U01220) ubiquitin/S27a fusion protein [Neurospora crassa]

9

2E-68

gb|AAC13689.1| (AF056623) ubiquitin fusion protein

1004

7E-80

gb|AAC39499.1| (AF030296) ubiquitin conjugating enzyme UBC1

871

2E-62

gb|AAD42941.1|AF091621_1 (AF091621) ubiquitin-conjugating enzyme E2

571

5E-30

pir||T39286 probable ubiquitin-protein ligase

a3b02ne

6E-08

pir||T40313 ubiquitin-like modifier

269

3E-10

pir||T41737 ubiquitin-conjugating-enzyme-like protein

1428

E-121

pir||UQNC polyubiquitin 4 [Neurospora crassa]

a2b02ne

1E-06

ref|NP_010798.1|| ubiquitin-like protein; Smt3p

a1d01ne

3E-69

sp|P52493|UBC2_NEUCR UBIQUITIN-CONJUGATING ENZYME

Protein Turnover

346

3E-35

ref|NP_013618.1|| proteasome component Y7; Pre8p

c6f09ne

7E-36

emb|CAB95999.1| (AL360054) AAA family ATPase with similarity to katanin

a3a09ne

9E-34

dbj|BAB09831.1| (AB006708) ATP-dependent protease proteolytic subunit ClpP-like

b1d02ne

5E-10

gb|AAC03564.2| (AF047689) subtilisin-like serine protease

76

2E-27

gi|1352918|sp|P47154|ST24_YEAST CAAX PRENYL PROTEASE 1

550

1E-32

gi|2507240|sp|P32329|YAP3_YEAST ASPARTIC PROTEINASE 3

b8h08nm

5E-40

pir||T39572 probable proteinase subunit

876

8E-51

p|Q01294|CARP_NEUCR VACUOLAR PROTEASE A PRECURSOR

a9c06ne

2E-84

sp|Q09769|LONM_SCHPO PUTATIVE MITOCHONDRIAL ATP-DEPENDENT PROTEASE PRECURSOR

a9g08ne

2E-22

ref|NP_036232.1|| aspartyl aminopeptidase

298

4E-61

sp|P30574|CBPY_CANAL CARBOXYPEPTIDASE Y PRECURSOR

b3g10ne

5E-12

sp|P34946|CPS1_PENJA CARBOXYPEPTIDASE S

106

2E-36

sp|P52718|PEPF_ASPNG SERINE-TYPE CARBOXYPEPTIDASE F PRECURSOR

635

2E-36

emb|CAB88559.1| (AL353819) probable 26S ATP/ubiquitin-dependent proteinase chain S4 [Neurospora crassa]

813

1E-54

emb|CAB91191.1| (AL355925) probable 26s proteasome p44.5 protein [Neurospora crassa]

1013

4E-73

emb|CAB91305.1| (AL355928) probable 26S protease subunit (SUG1) protein [Neurospora crassa]

b8a01ne

2E-37

emb|CAB91768.1| (AL356173) probable 26S proteasome regulatory particle chain RPT1 [Neurospora crassa]

a8g09ne

5E-55

gi|130858|sp|P21243|PRCI_YEAST PROTEASOME COMPONENT

b8b03ne

2E-10

gi|130882|sp|P23724|PRC5_YEAST POTENTIAL PROTEASOME COMPONENT C5

g1d08ne

7E-21

pir||T39054 probable proteasome component

787

1E-95

p|Q09682|PRC9_SCHPO PUTATIVE PROTEASOME COMPONENT C9/Y13

1008

3E-70

ref|NP_012533.1|| Subunit of 20S proteasome; Pre3p

tRNA Synthesis/Metabolism

a2b07ne

3E-33

gi|1711623|sp|P40825|SYAC_YEAST ALANYL-TRNA SYNTHETASE

810

1E-08

sp|O13651|SYIC_SCHPO ISOLEUCYL-TRNA SYNTHETASE

1045

2E-25

dbj|BAA06688.1| (D31890) similar to lysyl tRNA synthetase

330

2E-18

gi|3122655|sp|Q12211|PUS1_YEAST PSEUDOURIDYLATE SYNTHASE 1

1042

1E-61

pir||T38232 probable phenylalanyl-trna synthetase

319

0.00001

ref|NP_011452.1|| pseudouridine synthase 2; Pus2p

541

4E-26

pir||T40867 ASPARTYL-TRNA SYNTHETASE

g9b12ne

7E-20

sp|O13969|SYTM_SCHPO PROBABLE THREONYL-TRNA SYNTHETASE

e2c07ne

1E-79

sp|P28350|SYV_NEUCR VALYL-TRNA SYNTHETASE

Translation Factors

1336

E-124

sp|Q01372|EF1A_NEUCR ELONGATION FACTOR 1-ALPHA

21

4E-31

dbj|BAA11572.1| (D82574) elongation factor 1 beta

757

1E-34

ef|NP_012842.1|| Translation elongation factor EF-1gamma; Tef4p

883

8E-74

gb|AAF81925.1|AF107287_1 (AF107287) elongation factor 2

c2c02ne

8E-09

sp|P25997|EF3_CANAL ELONGATION FACTOR 3 (EF-3)

1314

6E-90

sp|P38672|IF5A_NEUCR INITIATION FACTOR 5A (EIF-5A) (EIF-4D)

17

4E-17

gb|AAC39871.1| (AF038957) translation initiation factor 4e

1351

7E-34

ref|NP_014155.1|| translation initiation factor 3 (eIF3)

337

2E-28

sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)

1168

7E-29

emb|CAA70166.1| (Y08969) Nascent polypeptide associated complex protein alpha subunit

a4b11ne

E-102

gb|AAC08410.1| (AF053983) translation release factor subunit 1

VII. RNA Synthesis

RNA Polymerases

1027

2E-16

gi|1710661|sp|P52435|RPBY_HUMAN DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYPEPTIDE (RPB11)

RNA Processing

890

9E-46

emb|CAB91372.1| (AL355930) related to snRNP protein SMX3 [Neurospora crassa]

a7f11ne

3E-10

gb|AAB72038.1| (U85207) snRNP core Sm protein homolog Sm-X5

602

1E-47

gi|2500534|sp|Q07478|HE47_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG

118

1E-39

pir||T38514 small nuclear ribonucleoprotein

1110

1E-30

pir||T39362 U5 snRNP-like protein

1370

1E-85

pir||T39724 probable pre-mrna splicing factor atp-dependent rna helicase

921

6E-08

pir||T41178 splicing factor

252

2E-58

ref|NP_014955.1|| 57 kDa nucleolar protein; Nop58p

a7f08nm

2E-26

ref|NP_036454.1|| U6 snRNA-associated Sm-like protein

b8a09ne

8E-15

ref|NP_058079.1|| Ser/Arg-related nuclear matrix protein

b3d01ne

7E-16

dbj|BAB03001.1| (AP001297) glycine-rich RNA binding protein-like

Transcription Factors

376

3E-32

emb|CAB76217.1| (AL157991) potential transcriptional adaptor; similar to yeast ada2

1335

7E-95

emb|CAB91681.1| (AL356172) related to AP-1-like transcription factor [Neurospora crassa]

1292

3E-07

gb|AAA86754.1| (U39049) Hmp1

972

5E-42

gb|AAC31206.1| (AF080600) homeodomain DNA-binding transcription factor

116

4E-48

gb|AAD39161.1|AF142423_1 (AF142423) small zinc finger protein Tim8 [Neurospora crassa]

385

1E-36

gb|AAF06076.1|AF151116_1 (AF151116) beta NAC homolog

395

1E-06

pir||S78571 transcription factor HAC1

202

1E-11

pir||T39935 RNA binding protein

d3b11ne

1E-07

pir||T40539 zinc finger protein

b2d12ne

7E-32

pir||T40697 probable tata binding protein-interacting protein

1343

3E-60

sp|P11115|CPC1_NEUCR CROSS-PATHWAY CONTROL PROTEIN 1

a9c03ne

5E-11

sp|P49373|TFS2_SCHPO TRANSCRIPTION ELONGATION FACTOR

b5c06ne

1E-57

sp|P78706|RCO1_NEUCR TRANSCRIPTIONAL REPRESSOR RCO-1

170

8E-33

sp|P87000|AC15_NEUCR TRANSCRIPTIONAL ACTIVATOR PROTEIN ACU-15

730

6E-19

gb|AAD40003.1|AF150097_1 (AF150097) small zinc finger-like protein

VIII. Unclassified

clock controlled genes (without known function, not including the newly identified ccgs)

1446

4E-32

sp|P22151| ccg-1 (glucose repressible gene grg-1)

1447

7E-42

sp|Q04571| ccg-2 (hydrophobin precursor)

1262

2E-42

gi|1184781| ccg-4

1435

2E-36

gi|3746899| ccg-6

1356

2E-81

gi|3746897| ccg-8

1358

3E-185

gi|3746895| ccg-9

others

162

5E-07

dbj|BAA86537.1| (AB033049) KIAA1223 protein [Homo sapiens]

e3e12ne

2E-11

dbj|BAA96543.1| (AB035593) p67-phox [Tursiops truncatus]

67

3E-20

emb|CAA08813.1| (AJ009758) trk-1 [Neurospora crassa]

d3g10ne

2E-32

emb|CAB56701.1| (AJ249796) NIPSNAP1 protein [Danio rerio]

b6b04ne

6E-11

emb|CAB62571.1| (Y17330) SUAPRGA1 [Emericella nidulans]

687

1E-14

emb|CAB91246.1| (AL355926) adrenoleukodystrophy related protein [Neurospora crassa]

c4d05nm

2E-82

emb|CAB91388.1| (AL355930) 7alpha-cephem-methoxylase P8 chain related protein [Neurospora crassa]

195

2E-32

emb|CAB91673.1| (AL356172) related to SCP160 protein [Neurospora crassa]

155

5E-74

emb|CAB99185.1| (AL390189) conserved hypothetical protein [Neurospora crassa]

70

1E-10

gb|AAA29595.1| (L27591) erythrocyte membrane antigen 1 [Plasmodium chabaudi]

1371

3E-56

gb|AAB53650.1| (U93506) symbiosis-related protein [Laccaria bicolor]

1021

1E-10

gb|AAC26079.1| (AF013590) extragenic suppressor of the bimD6 mutation

b4h07ne

3E-59

gb|AAC27297.1| (AF069492) SONA [Aspergillus nidulans]

924

1E-22

gb|AAC72940.1| (AF091071) Rer1 [Homo sapiens]

1104

6E-13

gb|AAD34615.1|AF153283_1 (AF153283) putative progesterone-binding protein homolog

328

7E-09

gb|AAD43994.1| (U59485) AttT [Agrobacterium tumefaciens]

384

4E-22

gb|AAD44747.1|AF141323_18 (AF141323) IucB [Shigella flexneri]

a9d08ne

9E-72

gb|AAF08294.1|AF195874_1 (AF195874) heterokaryon incompatibility protein HET-C [Neurospora crassa]

159

2E-49

gb|AAF13743.1|AF109921_1 (AF109921) caleosin [Sesamum indicum]

33

8E-20

gb|AAF15069.1|AC011914_11 (AC011914) putative mutT protein [Arabidopsis thaliana]

h5b05ne

1E-17

gb|AAF51238.1| (AE003582) CG3214 gene product [Drosophila melanogaster]

d5e10ne

2E-12

gb|AAF54534.1| (AE003688) CG14688 gene product [Drosophila melanogaster]

316

5E-12

gb|AAF67481.1|AF155662_1 (AF155662) putative 16.7 kDa protein [Homo sapiens]

314

6E-31

gi|1723661|sp|P53224|ORM1_YEAST ORM1 PROTEIN

745

5E-49

gi|549064|sp|P35691|TCTP_YEAST TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG

453

2E-18

gi|6016046|sp|O35943|FRDA_MOUSE FRATAXIN

379

9E-18

gi|732206|sp|P40344|AUT1_YEAST AUTOPHAGOCYTOSIS PROTEIN

565

1E-83

pir||A25784 hypothetical 70K protein - Neurospora crassa mitochondrion

a5g09ne

5E-17

pir||A70842 probable amiB protein - Mycobacterium tuberculosis

780

9E-10

pir||C30208 hypothetical protein 2 (cpc-1 5' region) [Neurospora crassa]

h1c10ne

1E-10

pir||JC4750 gEgh 16 protein - grass mildew

927

7E-57

pir||S04556 hypothetical protein L - Neurospora crassa mitochondrion

381

4E-13

pir||S06607 23S rRNA intron 2 protein - Podospora anserina mitochondrion

643

5E-51

pir||S59950 het-c2 protein - Podospora anserina

1044

0.00002

pir||T15174 hypothetical protein C48E7.3 - Caenorhabditis elegans

1061

6E-21

pir||T37500 vip1 protein - fission yeast

610

1E-16

pir||T41619 hypothetical protein SPCC794.11c - fission yeast

1411

9E-45

ref|NP_009634.1|| Homolog to sporulation specific protein SPS2 (S. cerevisiae)

1245

8E-10

ref|NP_036030.1|| suppressor of Lec15 homolog

814

2E-15

ref|NP_037439.1|| non-functional folate binding protein

1136

1E-50

ref|NP_057128.1|| CGI-105 protein

1421

7E-39

sp|O74238|SNP1_PHANO PROTEIN SNODPROT1 PRECURSOR

540

7E-42

sp|P10169|CON8_NEUCR CONIDIATION-SPECIFIC PROTEIN 8

1116

2E-24

sp|P10713|CONX_NEUCR CONIDIATION-SPECIFIC PROTEIN 10

1098

1E-48

sp|P34762|CON6_NEUCR CONIDIATION-SPECIFIC PROTEIN 6

715

2E-34

sp|P38093|FLBA_EMENI DEVELOPMENTAL REGULATOR FLBA

b5d02nm

7E-35

sp|P56092|EPD1_CANMA EPD1 PROTEIN PRECURSOR (ESSENTIAL FOR PSEUDOHYPHAL DEVELOPMENT 1)

1121

4E-70

sp|P77243|PRPD_ECOLI PRPD PROTEIN

19

7E-08

sp|Q09711|NCS1_SCHPO HYPOTHETICAL CALCIUM-BINDING PROTEIN

1434

7E-28

sp|Q09912|PSI_SCHPO PSI PROTEIN

1380

E-13

||T08877 Modin - Podospora anserina

a A single clone or contig ID is given in those cases in which several clones or contigs have homology to the same gene. This can happen in cases when one contig corresponds to the 5’ end and one to the 3’ end of a given gene. The clone or contig given is the one with the best P/E value. A complete list of contigs corresponding to a single gene can be found in an extended version of this table on our web page.