Fusarium sporotrichioides cDNA Sequencing

updated 11/11/2010 - broe

To date, we have isolated over 5000 cDNA clones from Fusarium sporotrichioides in collaboration with Dr. Marian Beremand and her students Andrew Peplow and Andrew Tag at the Department of Plant Pathology and Microbiology at Texas A&M University, College Station, Texas.

Fusarium sporotrichioides Latest Data Release - May 19, 2000




Search the Fusarium sporotrichioides cDNA sequence data



Obtaining the sequence data via ftp

All of the cDNA sequence data we have obtained to date is available from our ftp site directly, by anonymous ftp to ftp.genome.ou.edu (logon as anonymous with password your e-mail address), cd to /pub/fs and get the ascii data file called fs_est_with_anno.fa or fs_est_wo_anno.fa. These files contains all the EST's sequenced to date concatenated into a flat file either with or without annotation, respectively.

  • Fusarium sporotrichioides Sequencing Data via ftp to ftp://ftp.genome.ou.edu/pub/fs
  • Fusarium sporotrichioides S equencing Data via ftp to ftp://ftp.genome.ou.edu/home/ftp/pub/fs/

    Clarification of our naming convention

    For Fusarium sporotrichioides
    • The 3' end sequences have the notation .f1 at the end of the clone name
    • The 5' end sequences have the notation .r1 at the end of the clone name


    Clone Availability

    At the present time, none of the cDNA clones are available for distribution. We anticipate at some point to generate a set of arrayed cDNA clones that will be made available through the ATCC.

    Acknowledgment

    Should you find this data useful and wish to reference it, please acknowledge the Fusarium sporotrichioides cDNA Sequencing Project, and Bruce A. Roe, Qun Ren, Doris Kupfer, HongShing Lai, Marian Beremand, Andrew Peplow and Andrew Tag; this project is supported by funds from the University of Oklahoma, Texas A&M University and the NSF-EPSCoR program.

    If possible, please send us both the literature citation once published, and a copy of the manuscript.

    Thanks,
    Bruce Roe, Qun Ren, Andy Peterson, Doris Kupfer, HongShing Lai, Marian Beremand, Andrew Peplow and Andrew Tag. The University of Oklahoma, Department of Chemistry and Biochemistry, Norman, Oklahoma 73019 and Texas A&M University, Department of Plant Pathology and Microbiology, College Station, Texas.

    Bruce Roe, broe@ou.edu

    Qun Ren, qren@aardvark.ucs.ou.edu
    Doris Kupfer, dkupfer@ou.edu
    Marian Beremand, mnb3107@acs.tamu.edu

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    Bruce Roe, broe@ou.edu