Miscellaneous Clones Sequencing Progress



Fri Jan 30 00:40:04 CST 2015
Clone         Clone        Primary             Genbank   Level Phrap    Phrap  Phrap Phrap Consed_Err         Latest     Map        Organism       Major
                       Current/Original        Accession       Size     Ctgs   Fold  Base  Per 10KB           Submission
Type          Name        Researcher           Number          Hi       Hi(Lo) Cover Qual  Hi  ( Lo )   Reads Date       Location              Collaborator
======= ============= ======================== ========= ===== ======== ====== ===== ===== ============ ===== ========== ======== ============ =============
Cosmid  sw06e08       Doris M. Kupfer          AC000133     3    38807  1 (0)                 -(    -)                - -        Emericella nidulans (Aspergillus nidulans)          -
Cosmid  30b1          Jennifer Hausner         AC004395     3    37323  1 (1)   5.4  79.1  0.22( 0.21)   470 1998-11-26 VIII     Emericella nidulans  Keller,N.
cosmid  2h2           Doris Kupfer             AC005299     3    40563  1 (1)   5.9  84.3  0.01(89.64)   605 1998-10-23 viii     Emericella nidulans  Keller,N.
Cosmid  ap0           Jennifer Lewis           AC005991     3    37754  1 (1)   6.2  81.1  0.27( 0.27)   447 2003-03-11 -        Aspergillus parasiticus  Keller,N.
Cosmid  nc14          Hua Zhu                  AC007959     2    38865  3 (3)   8.2  82.1 294.65(215.47)   808 2014-07-15 -        Neurospora crassa Aramayo,R.
Cosmid  nc17          Hua Zhu                  AC007960     2    39847  3 (3)   8.5  82.9 768.07(554.93)   995 2014-07-15 -        Neurospora crassa Aramayo,R.
Cosmid  nc19          Doris Kupfer/Sara Downar AC025046     2    32441  2 (2)   5.2  77.1   0.7(115.83)  1289 2014-07-15 -        Neurospora crassa Aramayo,R.
cosmid  af-5e6        Doris Kupfer             AC091253     2    36835  2 (2)  13.9  87.2 237.23(1382.41)  2307 2014-07-15 IV       Aspergillus flavus   Payne,G.
cosmid  af-30e1       Doris Kupfer             AC087725     3    41361  1 (1)   8.3  83.8  0.06( 0.05)   871 2014-07-15 -        Aspergillus flavus   Payne,G.
BAC     uhobac-2b7    Doris Kupfer / Sunkyoung AC114900     3   100829  1 (1)   9.9  86.0  0.45( 0.42)  1733 2014-07-15 -        Ustilago hordei Kronstad,J.
BAC     uhobac-1c16   Jiaxi Quan/Doris Kupfer  AC114898     2   152790  4 (2)   9.6  85.9   910(629.95)  2917 2014-07-15 -        Ustilago hordei Kronstad,J.
BAC     uhobac-4k21   Sulan Qi                 AC116560     3   100958  1 (1)  16.4  89.1  0.02( 0.02)  2867 2014-07-15 -        Ustilago hordei Kronstad,J.
BAC     uhobac-1n1    Doris Kupfer             AC114899     3   100185  1 (1)   9.3  85.1  0.04( 0.04)  1476 2014-07-15 -        Ustilago hordei Kronstad,J.
BAC     uhobac-5d9    Doris Kupfer / Limei Yan AC119572     3   152059  1 (1)   8.1  86.3  0.78( 8.42)  1966 2014-07-15 -        Ustilago hordei Kronstad,J.
Mito    mit-1         Jami E. Milam            AC024175     3    16596  1 (1)  15.2  87.1  0.01( 0.01)   829 2003-03-11 -        Danio rerio Broughton,R.E. 
cosmid  pyj7          Doris Kupfer             AC007872     3    33952  1 (1)   5.9  81.9  0.02( 0.02)   798 2003-03-11 -        Aspergillus parasiticus  Keller,N.
Cosmid  cos3b         Fares Z. Najar           AC004396     2    43782  2 (2)   8.5  84.0 303.99(673.45)  2404 2002-03-29 Genomic  Pseudomonas sp.  Hester,K.
cosmid  cos36         Sandra W. Clifton        AC000108     3    38570  1 (1)   9.2  75.8   0.9( 0.83)  1116 2003-03-11 -        Helicobacter pylori Akopyants,N.S. 
BAC     sabac-1       HongGui Jia              AC074316     3    56268  1 (1)   9.9  83.2  0.53( 0.49)  1134 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-4       Shaoping Lin             AC069311     3    17593  1 (1)  12.0  78.0  0.03( 0.03)   469 2002-03-27 -        staphylococcus aureus Iandolo,J.
BAC     sabac-7       HongGui Jia              AC078935     3    53354  1 (1)  10.3  84.4  0.15( 0.15)   871 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-9       Phoebe Loh/Sulan Qi      AC027138     3    46239  1 (1)   5.7  80.6  0.77( 0.69)   905 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-11      HongGui Jia              AC078934     3    55390  1 (1)  10.0  84.1  0.08( 0.08)   963 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-16      Shaoping Lin             AC074026     3    52695  1 (1)   6.4  77.7  0.57( 0.57)   834 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-32      Shaoping Lin             AC025951     3    22158  1 (1)  11.5  72.8  0.65( 0.65)   491 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-41      Shaoping Lin             AC074320     3    49479  1 (1)   5.8  75.5  0.64( 0.62)   686 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-43      Phoebe Loh/Sulan Qi      AC025592     3    55389  1 (1)   5.7  83.2  0.14( 0.14)   626 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-47      Phoebe Loh/Sulan Qi      AC069081     3    43986  1 (1)   6.9  77.5 10.46(10.46)   627 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-57      RunYing Tian             AC090969     3    40520  1 (1)   5.1  77.4  0.65( 0.65)   305 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-101     Phoebe Loh/Sulan Qi      AC025948     3    50152  1 (1)   5.3  78.1  1.41( 1.37)   798 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-103     RunYing Tian             AC074317     3    37669  1 (1)   7.9  80.7  0.79( 0.79)   547 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-106     Phoebe Loh/Sulan Qi      AC027136     3    49898  1 (1)   5.8  79.3  0.54( 0.64)   637 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-108     RunYing Tian             AC074318     3    51691  1 (1)  10.8  84.6  0.39( 1.41)   974 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-114     Phoebe Loh/Sulan Qi      AC025949     3    28142  1 (1)  12.3  87.7  0.05( 0.05)   598 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-115     YuDong Qian              AC078830     3    44051  1 (1)   8.6  81.9  0.31( 0.31)   717 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-123     Phoebe Loh/Sulan Qi      AC027137     3    49643  1 (1)   8.3  81.3  0.26( 0.25)   763 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-124     Yudong Qian              AC078831     3    30501  1 (1)   8.7  84.1  0.02( 0.02)   543 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-125     RunYing Tian             AC090967     3    27650  1 (1)  14.0  85.8  0.22( 0.22)   723 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-126     RunYing Tian             AC090968     3    39425  1 (1)   4.6  70.5  0.83( 0.83)   333 2002-03-27 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-130     Phoebe Loh/Sulan Qi      AC025950     3    49336  1 (1)   7.2  78.5  0.99( 0.95)   641 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-134     Phoebe Loh/Sulan Qi      AC025591     3    58431  1 (1)   8.6  81.8  0.57( 0.57)   892 2003-03-11 -        Staphylococcus aureus Iandolo,J.
BAC     sabac-135     YuDong Qian              AC078832     3    44901  1 (1)   8.7  80.6  0.63( 0.63)   719 2003-03-11 -        Staphylococcus aureus Iandolo,J.
WGS     ap1           Fares Najar/Shaoping Lin auto_ap1     1  2318814 1 (125)  13.7  80.0  1.33(438.93) 37715          - -        A Project #1          -
WGS     ap5           Baifang Qin              auto_ap5     1  2279468 3 (83)  11.8  81.2  0.68(217.51) 28277          - -        A Project #5          -
WGS     ap7           Fares Najar/Shaoping Lin auto_ap7     1  2308833 5 (188)  11.5  79.0  5.94(321.48) 28447          - -        A Project #7          -
WGS     smed          Ruihua Shi               auto_smed     1  6972560  9 (9)  10.5  88.0  0.69(  5.1) 118558          - -        Sinorhizobium meidicae          -
WGS     azor          Doris Kupfer, Graham Wil auto_azor     1  1509618 527 (667)   2.8  78.1 1604.84(1515.68) 21319          - -        Azorhizobium caulinodans Holsters,M.
WGS     lepp          Jiaxin Qu                auto_lepp     1  4713363 72 (8)  14.5  88.1 23.57(57.07) 104179          - -        Leptospira interrogans          -
WGS     grip          Jiaxin Qu                auto_grip     1  4499130 62 (0)  13.7  89.2  9.84(    -) 165628          - -        Leptospira kirschneri          -
WGS     sp2           Baifang Qin/Honggui Jia/ auto_sp2     1  1814026  1 (1)   8.4  82.0  3.42(28.01) 23898          - -        Streptococcus pyogenes Ferretti,J.
WGS     ef            Simone Macmil             auto_ef     1 22851564 2225 (73)   3.4  27.5 691.66(3050.34) 53756          - -        Epichloe festucae          -
WGS     crr           Simone Macmil            auto_crr     1  2988361 1114 (0)   2.1  83.6 1623.15(    -) 223579          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest        Simone Macmil            auto_crrest     1        0  0 (0)                 -(    -)                - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-a      Simone Macmil            auto_crr     1        0  0 (0)                 -(    -)                - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-b      Simone Macmil            auto_crr     1        0  0 (0)                 -(    -)                - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-c      Simone Macmil                   -     1        0  0 (0)   5.6  31.1     -(    -)  1965          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-d      Simone Macmil                   -     1        0  0 (0)   3.9  44.7     -(    -)  2865          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-e      Simone Macmil                   -     1        0  0 (0)   3.1  28.4     -(    -)  2076          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-1      Simone Macmil            auto_crrest-1     1        0  0 (0)   3.2  58.2     -(    -) 75670          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-pool2  Simone Macmil            auto_crrest-pool2     1        0  0 (0)   5.5  48.4     -(    -) 14063          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-pool3  Simone Macmil            auto_crrest-pool3     1        0  0 (0)   6.5  50.3     -(    -) 42177          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-4      Simone Macmil            auto_crrest-4     1        0  0 (0)   8.8  55.4     -(    -) 41743          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-pool5  Simone Macmil            auto_crrest-pool5     1        0  0 (0)   9.8  54.8     -(    -) 61226          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-6      Simone Macmil            auto_crrest-6     1        0  0 (0)   7.0  57.2     -(    -) 61702          - -        Phymatotrichopsis omnivora   Marek,S.
EST     crrest-all    Simone Macmil            auto_crrest-all     1        0  0 (0)   2.6  33.4     -(    -)  6673          - -        Phymatotrichopsis omnivora   Marek,S.
BAC     sk4a          Baifang Qin              AC149125     3     5719  1 (1)   8.7  87.1  0.01( 0.01)   113 2014-07-15 -        Spiroplasma kunkelii Davis,R.E. 
WGS     da            Fares Najar/Chunmei Qu/P  auto_da     1  3245696 224 (233)   2.8  51.1 149.98(    -) 21550          - -        Desulfogleba alkanexedens Suflita,J.
WGS     ecoli_edl     Fares Najar              auto_ecoli_edl     1  4815317 133 (163)   0.8  31.5 298.17(59.94)  1231          - -           E. coli  Conway,T.
WGS     ecoli_sk      Fares Najar              auto_ecoli_sk     1  5394182 78 (80)   2.8  35.6 69.29(95.08)   934          - -           E. coli  Conway,T.
WGS     h8_phage      Graham Wiley             AC171169     2   104372  1 (1)  15.8  79.1 82.04(285.46)  4087 2014-07-15 -        Bacteriophage H8  Klebba,P.
WGS     Mimiviridae1  Ruihua Shi               auto_Mimiviridae1     1  1355188 16 (16)   4.0  34.7 25.74(77.96) 13224          - -        sea Mimiviridae1          -
-       JMC           -                               -     1        0  0 (0)                 -(    -)                - -                 -          -
-       C_zeina       -                               -     1  3155257 788 (875)   2.9  41.1 615.65(612.01) 147523          - -                 -          -
Fosmid  fosu1         Liping Zhou              AC148074     3    37026  1 (1)  13.3  85.8  0.13(138.45)   748 2014-07-15 -        Serratia marcescens Fletcher,J.
Fosmid  fosu2         Liping Zhou              AC148075     3    35399  1 (1)  13.8  88.5  0.05(138.91)   936 2014-07-15 -        Serratia marcescens Fletcher,J.
Fosmid  zdt-44a23     Chunmei Qu/Honggui Jia/L AC149043     3    35946  1 (1)   9.9  87.6  0.01( 0.01)  1062 2014-07-17 -        uncultured bacterium zdt-44a23 Elshahed,M.
Fosmid  zdt-14e13     Chunmei Qu/Honggui Jia/L AC150249     3    40893  1 (1)   7.4  80.5  0.65( 0.64)  1117 2014-07-17 -        uncultured bacterium zdt-14e13 Elshahed,M.
Fosmid  zdt-25h12     Chunmei Qu/Honggui Jia/L AC150250     3    41495  1 (1)   7.9  82.1   0.6( 0.57)   993 2014-07-17 -        uncultured bacterium zdt-25h12 Elshahed,M.
Fosmid  zdt-33i5      Chunmei Qu/Honggui Jia/L AC150251     3    36957  1 (1)  17.6  85.9  0.76( 0.76)  1268 2014-07-17 -        uncultured bacterium zdt-33i5 Elshahed,M.
Fosmid  zdt-45e5      Chunmei Qu/Honggui Jia/L AC160099     3    35742  1 (1)  14.3  86.5  0.76( 0.76)  1348 2014-07-17 -        uncultured bacterium zdt-45e5 Elshahed,M.
Fosmid  zdt-9n2       Chunmei Qu/Honggui Jia/L AC150248     3    36828  1 (1)   9.2  82.9  0.41( 0.42)  1042 2014-07-17 -        uncultured bacterium zdt-9n2 Elshahed,M.
Fosmid  zdt-48a5      Chunmei Qu/Honggui Jia/L AC150252     3    38838  1 (1)   8.6  86.9  0.23(110.74)  1017 2014-07-17 -        uncultured bacterium zdt-48a5 Elshahed,M.
Fosmid  zdt-25h14     Honggui Jia              AC160630     3    37210  1 (1)  11.5  88.2  0.03( 0.03)   844 2014-07-17 -        uncultured bacterium zdt-25h14 Elshahed,M.
Fosmid  zdt-39a1      Jiaxi Quan/Chunmei Qu/Ho AC160631     3    34608  1 (1)  10.2  79.4  0.69(222.46)   952 2010-09-17 -        uncultured bacterium zdt-39a1 Elshahed,M.
EST     rumen64       Leonid Sukharnikov              -     1     5574  2 (2)   2.1  16.3 1481.29(1497.7)   578          - -        EST from the rumen of high-grain fed          -
EST     rumen69       Leonid Sukharnikov              -     1        0  0 (1)   2.4  31.0     -(1107.39)  2134          - -        Bacterial ESTs from the rumen of prairie Hay-fed cattle          -
Bacterial halo          Fares Najar                     -     1  4813043 415 (414)   6.8  43.3 89.35(86.79) 10584          - -        Halophile unknown          -
454     teq           Chunmei Qu/ Ping Wang /Y        -     1  2120592 33 (33)  16.2  30.0 186.49(184.35)  3495          - -        Taylorella equigenitalis          -
454     daf           Chunmei Qu/ Ping Wang /Y        -     1  3702596 585 (584)   2.6  35.3 256.7(253.55) 12219          - -        Desulfovibrio africanus          -
454     dde           Chunmei Qu/Ping Wang/Yan        -     1  3648928 413 (401)   2.6  39.0 148.42(145.72)  5871          - -        Desulfovibrio desulfuricans          -
Genomic smutans_af    Shaoping Lin             auto_smutans_af     1  2006333  4 (9)   3.9  38.8 37.39(95.34) 10269          - -        Streptococcus mutans Ferretti,J.
Genomic smutans_19    Shaoping Lin             auto_smutans_19     1  3991935  2 (3)   5.1  46.1 149.7(156.14)  5864          - -        Streptococcus mutans Ferretti,J.
Genomic smutans_wt    Shaoping Lin             auto_smutans_wt     1  1963988 23 (39)   3.4  42.0 27.02(29.44)  4558          - -        Streptococcus mutans Ferretti,J.
Genomic smutans_ua    Shaoping Lin             auto_smutans_ua     1  2012479 9 (15)   3.3  35.1  19.2(49.34)  8864          - -        Streptococcus mutans Ferretti,J.
Genomic soligofermentas Graham Wiley, Simone Mac        -     1  2105327 103 (100)   8.3  42.1 156.35(147.39) 10061          - -        Streptococcus oligofermentans    Dong,X.
Bacterial vatypica      Simone Macmil, Graham Wi auto_vatypica     1  2903726 134 (149)   4.6  40.6 745.95(696.11) 23679          - -        Veillonella atypica, Gram+ bacteria      Qi,F.
Genomic xanth         Graham Wiley, Ying Fu    auto_xanth     1  4764522 186 (185)  11.4  44.9 128.3(129.92) 20534          - -        Xanthomonas_campestris          -
-       cev           -                               -     1   482249 8 (14)   8.7  63.1  6.61( 67.2)  5723          - -                 -          -
Genomic hav           Simone Macmil, Graham Wi auto_hav     1   256018 14 (13)   3.7  33.2 1190.32(1190.49)  5229          - -             Virus          -
Genomic hcv           Simone Macmil, Graham Wi auto_hcv     1    24522 10 (11)   2.6  13.2 1502.27(1475.18) 35133          - -             Virus          -
WGS     rn1           Simone Macmil                   -     1        0  0 (0)   2.3  26.7     -(    -)  6445          - -        Reniform nematode          -
WGS     rn2           Simone Macmil                   -     1  2199455 717 (731)   3.3  31.6 1695.3(1590.27) 110513          - -        Reniform nematode          -
EST     rnest3        Simone Macmil                   -     1        0  0 (0)   2.7  35.6     -(    -)  3683          - -        Reniform nematode          -
EST     rnest4        Simone Macmil                   -     1        0  0 (0)   3.3  41.9     -(    -)   274          - -        Reniform nematode          -
-       cgroot        -                               -     1     2013  1 (1)   2.0  11.4 3224.22(3176.41)  6620          - -                 -          -
-       cgleaf        -                               -     1     2527  1 (1)   2.4  37.4 2550.03(2530.12) 10209          - -                 -          -
EST     hfegg         Fares Z. Najar           auto_hfegg     1    21652  8 (8)   2.5  30.1 1171.92(1193.59)  5974          - -        HornFly egg     Zou,Z.
EST     hffemale      Fares Z. Najar           auto_hffemale     1    76834 28 (28)   2.5  35.4 2480.84(2474.24) 17542          - -        Horn fly - female     Zou,Z.
EST     hflarvae      Fares Z. Najar           auto_hflarvae     1    30907 10 (10)   2.0  25.9 2421.87(2402.82)  3773          - -        Horn fly - Larvae     Zou,Z.
EST     hfmale        Fares Z. Najar           auto_hfmale     1        0  0 (5)   2.7  19.8     -(2512.86)  2956          - -        Horn fly - male     Zou,Z.
EST     swegg         Yanbo Xing, Chunmei Qu   auto_swegg     1    65860 25 (26)   2.4  18.8 2110.47(2099.74) 11041          - -        Screwworm egg Guerrero,F.
EST     swfemale      Yanbo Xing, Chunmei Qu   auto_swfemale     1    53524 19 (21)   2.5  25.8 2208.35(2197.97)  9071          - -        Screwworm female Guerrero,F.
EST     swlarvae      Yanbo Xing, Chunmei Qu   auato_swlarve     1    48325 17 (17)   2.5  34.7 1831.82( 1827)  8834          - -        Screwworm laravae Guerrero,F.
EST     swmale        Yanbo Xing, Chunmei Qu   auto_swmale     1    51435 19 (19)   2.4  26.7 2106.92(2099.51) 14448          - -        Screwworm male Guerreo,F.
rRNA    lewispool2    Chunmei Qu               auto_lewispool2     1    18997  5 (5)   2.9  39.8 153.91(153.91)    57          - -        Community rRNA from an ancient caprolite   Lewis,C.
rRNA    lewispool3    Chunmei Qu               auto_lewispool3     1     8854  2 (2)   3.1  30.5 315.09(315.09)    62          - -        Community rRNA from an ancient caprolite   Lewis,C.
Genomic spyogenes_c770 Shaoping Lin             spyogenes_c770     1  1477318 312 (308)   3.1  36.4 338.64(337.17)  6126          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_f380 Shaoping Lin             spyogenes_f380     1  1115859 300 (302)   2.7  48.2 674.23(664.92)  7780          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_j138a Shaoping Lin             auto_spyogenes_j138a     1  1206261 309 (310)   2.9  33.9 508.66(502.18)  6894          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_j138b Shaoping Lin             auto_spyogenes_j138b     1  1458263 283 (277)   3.6  30.7 303.3(300.89)  6498          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_31rs67 Shaoping Lin             auto_spyogenes_31rs67     1    77001 28 (28)   2.4  33.2 1434.12(1427.89)  9308          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_b270 Shaoping Lin             auto_spyogenes_b270     1  1722215 249 (251)   5.0  38.4 176.5(177.19)  8086          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_b862 Shaoping Lin             auto_spyogenes_b862     1  1611351 205 (202)   4.5  33.5 162.16(162.54)  5472          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_c580 Shaoping Lin             auto_spyogenes_c580     1  1233048 278 (279)   2.8  30.9 535.5(534.78)  7661          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_d710 Shaoping Lin             auto_spyogenes_d710     1   454714 162 (168)   2.4  20.3 1020.55(1019.96)  8290          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_f374 Shaoping Lin             auto_spyogenes_f374     1   509934 176 (177)   2.4  19.3 965.22(969.09)  8082          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_f375 Shaoping Lin             auto_spyogenes_f375     1   470272 161 (164)   2.3  31.0 1049.62(1048.65)  8240          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_b878 Shaoping Lin             auto_spyogenes_b878     1   806397 255 (256)   2.5  41.5 808.63(801.93)  7360          - -        Streptococcus pyogenes  McShaw,M.
Genomix spyogenes_f741 Shaoping Lin             auto_spyogenes_f741     1   601374 192 (196)   2.4  23.0 893.64(885.25)  7657          - -        Streptococcus pyogenes          -
Genomic spyogenes_a744 Shaoping Lin             spyogenes_a744     1  1238044 304 (302)   2.6  30.4 548.42(548.96)  5962          - -        Streptococcus pyogenes  McShaw,M.
Genomic spyogenes_d754 Shaoping Lin             auto_spyogenes_d754     1   387884 133 (135)   2.4  25.8 1116.24(1120.79)  8719          - -        Streptococcus pyogenes          -
Genomic spyogenes_d402 Shaoping Lin             auto_spyogenes_d402     1    23404  9 (9)   2.4  22.8 1637.09(1626.81)  8707          - -        Streptococcus pyogenes  McShaw,M.
Genomic haloferax     Simone Macmil, Graham Wi auto_Haloferax     1  4799044 31 (31)  11.8  37.3 80.24(80.34) 10833          - -         Haloferax   Xiang,H.
genomic marinebact    Graham Wiley             marinebact     1  1660311 515 (516)   2.6  30.2 790.79(793.08) 16298          - -        Marine bacterium          -
Genomic bisulfitedna  Simone Macmil                   - Ensembl     1     3352  1 (3)   2.5  39.3 682.18(642.81) 23011          - -        Homo sapiens     Shi,H.
-       tick          -                               -     1    64219 21 (21)   2.5  68.8 2643.29(2624.93) 24289          - -                 -          -
-       leo1          -                               -     1        0  0 (0)                 -(    -)                - -                 -          -
-       leo2          -                               -     1        0  0 (0)                 -(    -)                - -                 -          -
-       8a_825b       -                               -     1        0  0 (0)   3.3  22.1     -(    -)   360          - -                 -          -
-       8b_805a       -                               -     1        0  0 (0)   2.3  22.8     -(    -)    72          - -                 -          -
-       p1ac          -                               -     1        0  0 (0)   2.1  18.1     -(    -)    88          - -                 -          -
-       p1aw          -                               -     1        0  0 (0)                 -(    -)                - -                 -          -
-       p5ac          -                               -     1        0  0 (0)   0.0   0.0     -(    -)     3          - -                 -          -
-       p5aw          -                               -     1        0  0 (0)   2.4  18.5     -(    -)   116          - -                 -          -
-       pkfs          -                               -     1        0  0 (0)   2.3  17.9     -(    -)    39          - -                 -          -
-       n6            -                               -     1        0  0 (0)   6.2  44.9     -(    -) 12058          - -                 -          -
-       epimedium     -                               -     1    17574  8 (9)   2.7  52.3 1843.02(1810.78) 29888          - -                 -          -
-       lycium        -                               -     1    22771 10 (11)   2.6  45.6 1839.19(1784.76) 51955          - -                 -          -
-       gq28          -                               -     1        0  0 (0)   2.4  21.7     -(    -)  7979          - -                 -          -
-       gq31          -                               -     1        0  0 (0)   2.3  14.9     -(    -) 11109          - -                 -          -
-       gq32          -                               -     1        0  0 (0)   2.4  17.0     -(    -) 11654          - -                 -          -
-       gq33          -                               -     1        0  0 (0)   2.3  23.4     -(    -)  5274          - -                 -          -
-       scbh1         -                               -     1   583732 75 (74)   3.7  31.7 289.12(281.5)  3509          - -                 -          -
-       scbh2         -                               -     1   615945 48 (41)   5.5  32.3 395.05(398.64)  3956          - -                 -          -
-       scbh3         -                               -     1   527496 62 (59)   4.6  27.3 223.46(214.26)  1906          - -                 -          -
-       scbh4         -                               -     1    37779 15 (16)   1.9  21.9 1764.73(1745.52)  2819          - -                 -          -
-       scbv1         -                               -     1   459074 41 (42)   3.6  36.0 178.68(193.11)  2904          - -                 -          -
-       scbv2         -                               -     1   404308 31 (31)   5.0  35.0 387.52(383.57)  3028          - -                 -          -
-       scbv3         -                               -     1   401683 59 (57)   3.5  31.5 644.09(625.42)  3124          - -                 -          -
-       scbv4         -                               -     1   584664 25 (25)   6.3  34.8 476.56(486.94)  4616          - -                 -          -
-       scbv5         -                               -     1   515357 38 (37)   8.2  44.3 259.76(259.14)  3496          - -                 -          -
BAC     shcr-100b23   Simone Macmil            FJ348719     1   176450 16 (16)   8.3  41.7 88.97(78.93)   597          - -        Saccharum officinarum    Ming,R.
BAC     shcr-43o10    Simone Macmil                   -     1   137189  7 (7)   9.8  41.4 35.16( 34.4)   631          - -        Saccharum officinarum    Ming,R.
BAC     shcr-79a20    Simone Macmil            FJ348718     1    94015  8 (8)   8.5  44.7 35.08(30.99)   521          - -        Saccharum officinarum    Ming,R.
BAC     shcr-43h1     Simone Macmil            FJ348715     1   340633  9 (9)   6.4  40.1 142.56(142.56)   524          - -        Saccharum officinarum    Ming,R.
BAC     shcr-40e22    Simone Macmil            FJ348716     1   154465 14 (14)   8.3  46.3 674.48(663.98)   896          - -        Saccharum officinarum    Ming,R.
BAC     shcr-110m4    Simone Macmil            FJ348723     1   146362 11 (11)  11.0  43.7 26.96(27.83)   752          - -        Saccharum officinarum    Ming,R.
BAC     shcr-108j8    Simone Macmil            FJ348721     1   111144  7 (6)   7.9  34.8 26.98(19.31)   851          - -        Saccharum officinarum    Ming,R.
BAC     shcr-109d21   Simone Macmil            FJ348722     1   128558  7 (6)   9.4  43.9 11.68(13.17)   770          - -        Saccharum officinarum    Ming,R.
BAC     shcr-19d20    Simone Macmil                   -     1   196431  1 (1)  15.6  34.3 63.77(63.52)   358          - -        Saccharum officinarum    Ming,R.
BAC     shcr-104n3    Simone Macmil            FJ348720     1   302441  6 (7)  13.1  46.0 45.13(47.96)  1135          - -        Saccharum officinarum    Ming,R.
BAC     shcr-126g4    Simone Macmil            FJ348725     1    84840  6 (6)  12.4  41.9 22.35( 20.7)   303          - -        Saccharum officinarum    Ming,R.
BAC     shcr-118l15   Simone Macmil            FJ348724     1    97777  5 (5)   8.1  44.4 25.76( 25.7)   530          - -        Saccharum officinarum    Ming,R.
BAC     shcr-159c20   Simone Macmil            FJ348726     1   125359 11 (10)   8.6  36.3 50.43(42.53)   565          - -        Saccharum officinarum    Ming,R.
BAC     shcr-150m18   Simone Macmil            FJ348733     1   128096  2 (2)  11.5  44.2   6.6(  6.6)   538          - -        Saccharum officinarum    Ming,R.
BAC     shcr-165p20   Simone Macmil            FJ348727     1   112174  7 (6)  10.0  40.2 53.64( 9.49)   567          - -        Saccharum officinarum    Ming,R.
BAC     shcr-204d12   Simone Macmil            FJ348731     1    96107  4 (5)   4.4  38.8 37.37( 36.4)   456          - -        Saccharum officinarum    Ming,R.
BAC     shcr-215o2    Simone Macmil            FJ348732     1    78155  8 (8)   3.7  39.0 58.77(89.05)   504          - -        Saccharum officinarum    Ming,R.
BAC     shcr-175o7    Simone Macmil            FJ348729     1    78889 20 (17)   2.9  27.7 286.13(  271)   596          - -        Saccharum officinarum    Ming,R.
BAC     shcr-187j16   Simone Macmil            FJ348730     1   119283 10 (10)   4.0  32.4 50.59(50.56)   691          - -        Saccharum officinarum    Ming,R.
BAC     shcr-172l1    Simone Macmil            FJ348728     1    93934  5 (5)   4.7  45.0  8.75(206.99)   622          - -        Saccharum officinarum    Ming,R.
-       cotp1         -                               -     1   225092  8 (7)   4.2  71.1 410.41(975.97)  3946          - -                 -          -
-       cotp1test     -                               -     1   216375 16 (13)   2.2  34.1 141.23(146.63)   804          - -                 -          -
-       cotp2         -                               -     1   260207  5 (5)   5.7  76.7 214.35(604.18)  4132          - -                 -          -
-       cotp3         -                               -     1   183201 18 (18)   5.4  83.0 916.97(1292.45)  5049          - -                 -          -
-       cotp4         -                               -     1   184803  4 (4)   6.2  80.3 367.47(763.51)  4564          - -                 -          -
-       cotp5         -                               -     1   145309 19 (19)   3.7  78.1 1156.86(1200.59)  3895          - -                 -          -
-       cotp123       -                               -     1   440293 22 (25)   5.6  82.0 940.47(1584.8) 10857          - -                 -          -
-       cotp45        -                               -     1   253776  8 (8)   6.0  85.2 725.17(1220.07)  6732          - -                 -          -
BAC     cbv-101n18    Simone Macmil            AC245509     1   117218  2 (2)   1.2  26.2 268.82(268.53)   773 2014-07-15 -        Gossypium hirsutum          -
WGS     cbv-102m21    Simone Macmil            AC245508     1   119526  3 (3)   2.5  46.8 205.55(515.33)   780 2014-07-15 -        Gossypium hirsutum           -
BAC     cbv-103a21    Simone Macmil            AC245640     1   117222  2 (2)   1.2  47.4 128.78(432.01)   775 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-103i14    Simone Macmil            AC245648     1   207632  5 (5)   1.3  41.2 295.55(366.89)   783 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-103l18    Simone Macmil            AC245652     1    85057 14 (14)   2.7  45.4 295.17(918.61)   805 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-123k05    Simone Macmil                   -     1        0  0 (1)   1.6  38.4     -(5297.93)   774          - -        Gossypium hirsutum          -
BAC     cbv-133f04    Simone Macmil            AC245642     1   202643  4 (5)   1.2  28.2 329.91(465.7)   782 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-155k01    Simone Macmil            AC245653     1   234729 4 (21)   1.0  38.7 295.4(1516.68)   776 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-15c19     Simone Macmil            AC245645     1   119905  2 (4)   2.2  41.4 176.5(650.04)   766 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-165g03    Simone Macmil            AC245655     1   186779  3 (5)   1.3  25.9 244.82(431.82)   775 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-176f03    Simone Macmil            AC245646     1   137056  8 (9)   2.7  72.1 175.36(747.47)  1546 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-188k21    Simone Macmil            AC245644     1   121992  2 (2)   3.3  54.8 122.12(584.99)   773 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-198m14    Simone Macmil            AC245641     1   101454  7 (8)   3.2  57.4 167.75(386.55)   778 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-31n01     Simone Macmil            AC245647     1   108679  1 (1)   3.4  63.8 74.43(1106.86)  1447 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-4p17      Simone Macmil            AC245643     1   113208  2 (2)   3.9  72.8 57.03(276.55)   771 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-56o13     Simone Macmil            AC245649     1   164068  4 (4)   4.7  58.9 179.65(202.81)   771 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-64m05     Simone Macmil            AC245654     1   185261  2 (3)   0.8  45.0 216.9(416.85)   779 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-6g16      Simone Macmil            AC245651     1   116173 14 (18)   2.1  31.5 337.8(758.77)   784 2014-07-15 -        Gossypium hirsutum          -
BAC     cbv-76h08     Simone Macmil            AC245650     1   112118  4 (5)   1.2  46.7 206.35(358.31)   778 2014-07-15 -        Gossypium hirsutum          -
-       prv1          -                               -     1        0  0 (0)   2.0  16.2     -(    -) 27865          - -                 -          -
-       nmva          -                               -     1    30586 13 (16)   2.4  26.8 2040.77(1995.79) 52028          - -                 -          -
-       nc12c         -                               -     1     2043  1 (6)   2.4  26.8 2222.05(2171.45) 54961          - -                 -          -
 
phase1=139988947 phase2=448932 phase3=2210179 total=142648058


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Bruce Roe, broe@ou.edu