VITA - Bruce A. Roe

Latest update 03-17-2009

Personal Information:

Born 1-1-42, New York City, N.Y., Married, two children and two grandchildren.

Academic Training:

BA 1959-1963 Hope College, Holland, Michigan - Chemistry, Mathematics, Physics.
MA 1963-1967 Western Michigan University, Kalamazoo, Michigan - Chem., Biochem.
Ph.D. 1968-1970 Western Michigan University, Kalamazoo, Michigan - Chem., Biochem.

Professional Experience:

1963-1968 Marshall Public Schools - High School Chemistry and Physics Teacher.
1968-1970 Western Michigan University - Graduate Teaching Fellow
1970-1973 SUNY at Stony Brook, N.I.H. Postdoctoral Research Fellow.
1973-1977 Kent State University - Assistant Professor, Department of Chemistry.
1977-1981 Kent State University - Associate Professor, Department of Chemistry and Research Associate Professor, Northeastern Ohio University College of Medicine, Department of Pathology and Biology.
1979-1981 Case Western Reserve University - Adjunct Associate Professor, Department of Polymer Chemistry.
1978-1979 Sabbatical Research Year in Dr. Frederick Sanger's Laboratory, Medical Research Council, Cambridge, England.
1981-pres. Professor, Dept. Chemistry and Biochemistry, University of Oklahoma.
1981-2000 Adjunct Professor, Dept. Biochem. and Molec. Biology, OU Health Sciences Center.
1997-pres. George Lynn Cross Research Professor of Chemistry and Biochemistry University of Oklahoma

Honors and Professional Activities:

Dupont Scholarship, Hope College, 1962-1963
Todd Fellowship, Western Michigan University, 1969-1970.
NIH Postdoctoral Research Fellow, SUNY at Stony Brook, 1970-1973.
NIH Research Career Development Award, 1976-1981.
University of Oklahoma Regents' Award for Research, 1984.
NIH Biochemistry Study Section and Site Visit Team, 1982-1983.
Chairman of four NIH Special Study Sections, 1984-1988.
Member of twelve NIH and DOE Human Genome Special Study Sections, 1989-present.
Member of NLM Informatics Study Section, 1993-present
Oklahoma Health Research Act Committee Member, 1986-present.
Chairperson, OU Recombinant DNA Committee - 1989-present
NSF-EPSCORE Committee Established Investigator, 1985-1988.
MASUA Honor Lecturer, 1986-1987 academic year.
American Society for Biochemistry and Molecular Biology
American Association for the Advancement of Science
Journal Editorial Board Member - BioTechniques, GENE - Computing for Molecular Biology Information Service, Genome Research.
Editor of the BioTechniques DNA Sequencing Issue.
Journal Editor of Methods: DNA Sequencing Issue

Specialties by Training and Experience:

Human, Mouse, and Bacterial Genomic Sequencing
Automated methods for DNA sequence analysis, Recombinant DNA, cloning, and tumor specific gene nucleotide sequence analysis
In vitro and in vivo DNA replication, gene transcription and mRNA translation
Structure and function of tRNA in normal and abnormal mammalian tissues
Studies on the role of modified nucleotides in mammalian tRNA.

Publications - Bruce. A. Roe

Books Published:

B. Roe, J. Crabtree and A. Khan. DNA Isolation and Sequencing: Essential Techniques Series, D. Rickwood, ed., J. Wiley and Sons New York (1996).

Manuscripts Submitted:

Manuscripts In Press:

Manuscripts Published: (272 total)

272. Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol. 75(16):5227-36 (2009)
271. Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL Wiley GB, Roe BA, Zhang W, Sunkar R. loning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families. New Phytol. 2009 Jun 23. [Epub ahead of print]
270. Mouse Genome Sequencing Consortium. Church DM, et al. Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol.;7(5):e1000112. (2009).
269.Guerrero FD, Dowd SE, Sun Y, Saldivar L, Wiley GB, Macmil SL, Najar F, Roe BA, Foil LD. Microarray analysis of female- and larval-specific gene expression in the horn fly (Diptera: Muscidae). J Med Entomol. 46(2):257-70 (2009).
268. Wiley G, Macmil S, Qu C, Wang P, Xing Y, White D, Li J, White JD, Domingo A, Roe BA. Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer. Current Protocoles in Human Genetics, Chapter 18, Unit 18.1, April (2009).
267. Aljamali M.N., Hern D., Kupfer D., Downard S., So S ., Roe B.A., Sauer J.R. Essenberg R.C. Transcriptome analysis of the salivary glands of the female tick Amblyomma americanum (Acari: Ixodidae). Insect Molecular Biology 18:129-154 (2009).
266. Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R. Cloning, characterization and expression analysis of porcine microRNAs. BMC Genomics. 10:65 (2009).
265.Muthukumar V, Melcher U, Pierce M, Wiley GB, Roe BA, Palmer MW, Thapa V, Ali A, Ding T. Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions. Virus Res. 141(2):169-173 (2009).
264. Tito RY, Macmil S, Wiley G, Najar F, Cleeland L, Qu C, Wang P, Romagne F, Leonard S, Ruiz AJ, Reinhard K, Roe BA, Lewis CM Jr.. Phylotyping and Functional Analysis of Two Ancient Human Microbiomes. PLoS ONE. 3(11):e3703 (2009).
263. Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature 457(7228):480-4 (2009).
262. Satou Y, Mineta K, Ogasawara M, Sasakura Y, Shoguchi E, Ueno K, Yamada L, Matsumoto J, Wasserscheid J, Dewar K, Wiley GB, Macmil SL, Roe BA, Zeller RW, Hastings KE, Lemaire P, Lindquist E, Endo T, Hotta K, Inaba K. Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations. Genome Biol. 9(10):R152 (2008).
261. Wawrzynski A, Ashfield T, Chen NW, Mammadov J, Nguyen A, Podicheti R, Cannon SB, Thareau V, Ameline-Torregrosa C, Cannon E, Chacko B, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Howell S, Ilut D, Lai H, Del Campo SM, Metcalf M, O'Bleness M, Pfeil BE, Ratnaparkhe MB, Samain S, Sanders I, Segurens B, Sevignac M, Sherman-Broyles S, Tucker DM, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MA, Young ND, Innes RW. Replication of Non-autonomous Retroelements in Soybean Appears to be Both Recent and Common. Plant Physiol. 148(4):1760-71 (2008).
260. Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, Ilut D, Jackson S, Lai H, Mammadov J, Campo SM, Metcalf M, Nguyen A, O'Bleness M, Pfeil BE, Podicheti R, Ratnaparkhe MB, Samain S, Sanders I, Segurens B, Sevignac M, Sherman-Broyles S, Thareau V, Tucker DM, Walling J, Wawrzynski A, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MA, Young ND. Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions Following Polyploidy in the Ancestor of Soybean. Plant Physiol. 148(4):1740-59 (2008).
259. McShan WM, Ferretti JJ, Karasawa T, Suvorov AN, Lin S, Qin B, Jia H, Kenton S, Najar F, Wu H, Scott J, Roe BA, Savic DJ. Genome Sequence of a Nephritogenic and Highly Transformable M49 Strain of Streptococcus pyogenes. J Bacteriol. 190(23):7773-85 (2008).
258. Yang S, Gao M, Xu C, Gao J, Deshpande S, Lin S, Roe BA, Zhu H. Alfalfa benefits from Medicago truncatula: the RCT1 gene from M. truncatula confers broad-spectrum resistance to anthracnose in alfalfa. Proc Natl Acad Sci U S A. 105(34):12164-9 (2008).
257. Elshahed MS, Youssef NH, Spain AM, Sheik C, Najar FZ, Sukharnikov LO, Roe BA, Davis JP, Schloss PD, Bailey VL, Krumholz LR. Novelty and uniqueness patterns of rare members of the soil biosphere. Appl Environ Microbiol. 74(17):5422-8 (2008).
256. Melcher U, Muthukumar V, Wiley GB, Min BE, Palmer MW, Verchot-Lubicz J, Ali A, Nelson RS, Roe BA, Thapa V, Pierce ML. Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya. J Virol Methods. 152(1-2):49-55 (2008).
255. Zou Z, Najar F, Wang Y, Roe B, Jiang H. Pyrosequence analysis of expressed sequence tags for Manduca sexta hemolymph proteins involved in immune responses. Insect Biochem Mol Biol. 38(6):677-82 (2008).
254. P.N Rajesh, M. O'Bleness, B.A. Roe BA, F.J. Muehlbauer. Analysis of genome organization, composition and microsynteny using 500 kb BAC sequences in chickpea. Theor Appl Genet. 117(3):449-58 (2008).
253. Y. Jiao, X. Jin , J. Yan, C. Zhang , F. Jiao, X. Li, B.A. Roe, D.B. Mount, W.Gu. A deletion mutation in Slc12a6 is associated with neuromuscular disease in gaxp mice. Genomics. 91(5):407-14 (2008).
252 R.C. De Lisle, W. Xu, B.A. Roe, D. Ziemer. Effects of Muclin (Dmbt1) deficiency on the gastrointestinal system. Am J Physiol Gastrointest Liver Physiol. 294(3):G717-27 (2008).
251. K-B. Lee, P. De Backer, T. Aono, C-T. Liu, S. Suzuki, T. Suzuki, T. Kaneko, M. Yamada, S. Tabata, D. M. Kupfer, F. Z. Najar, G. B. Wiley, B. A. Roe, T. T. Binnewies, D. W. Ussery, W. D'Haeze, J. Den Herder, D. Gevers, D. Vereecke, M. Holsters and H. Oyaizu. The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics 9:271 (2008).
250. A Siepel, M. Diekhans, B. Brejova, L. Langton, M. Stevens, CL Comstock, C. Davis, B. Ewing, S. Oommen, C. Lau, HC Yu, J. Li, BA Roe, P. Green , DS Gerhard, G.Temple, D. Haussler, MR Brent. Targeted discovery of novel human exons by comparative genomics. Genome Res. 17(12):1763-73. (2007).
249.C. Ameline-Torregrosa, BB Wang, MS O'Bleness, S. Deshpande, H. Zhu, B. Roe, ND Young, SB Cannon. Identification and Characterization of NBS-LRR Genes in the Model Plant Medicago truncatula Plant Physiol. 146(1):5-21 (2008).
248.S. Yang, M. Gao, S. Deshpande, S. Lin, BA Roe, H. Zhu. Genetic and physical localizS. Yang, M. Gao, S. Deshpande, S. Lin, BA Roe, H. Zhu. Genetic and physicalation of an anthracnose resistance gene in localization of an anthrocnose resistant gene in Medicago truncatula Theor Appl Genet. 116(1):45-52 (2008).
247.JA Schlueter, JY Lin, SD Schlueter, IF Vasylenko-Sanders, S Deshpande, J. Yi, M. O'Blennes. BA Roe, RT Nelson, BE Scheffler, SA Jackson SA, RC Shoemaker. Gene duplication and paleopolypoidy in soybean and the implications for whole genome sequencing. BMC Genomics. 8:330 (2007).
246.R. Jovelin, X. He, A. Amores, YL Yan, R. Shi, B. Qin, BA Roe, WA Cresko, JH Postlethwait. Duplication and divergence of fgf8 functions in teleost development and evolution. J Exp Zoology B Mol Dev Evol. 308(6):730-43 (2007).
245. AM Spain, AD Peacock, JD Istok, MS Elshahed, FZ Najar, BA Roe, DC White, LR Krumholz. Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer. Appl Environ Microbiol. 73(15):4892-904 (2007).
244.244.MS Elshahed, NH Youssef, Q Luo, FZ Najar, BA Roe, TM Sisk, SI Buhring, KU Hinrichs, LR Krumholz. Phylogenetic and metabolic diversity of the phylum Planctomycetes from an anaerobic, sulfide and sulfur-rich spring (Zodletone Spring, OK, USA). Appl Environ Microbiol. 73(15):4707-16 (2007).
243.W Rabsch, L Ma, G Wiley, FZ Najar, W Kaserer, DW Schuerch, JE Klebba, BA Roe, JA Laverde-Gomez, M Schallmey, SM Newton, PE Klebba. FepA- and TonB-dependent Bacteriophage H8: Receptor Binding and Genomic Sequence. J Bacteriol. 189(15):5658-74 (2007).
242. Y Jiao, J. Yan, F. Jiao, H-B. Yang, L.R. Donahue, X. Li, B.A. Roe, J. Stuart and W. Gu. A single nucleotide mutation in Nppc is associated with a long bone abnormality in lbab mice. BMC Genetics 8, 16-24 (2007).
241. S.C. Fernando, F.Z. Najar, X. Gou, L. Zhou, Y. Fu, R.D. Geisert, B.A. Roe and U. Desilva. Porcine kallikrein gene family: Genomic structure, mapping, and differential expression analysis. Genomics. 89, 429-438 (2007).
240. J. Yan, Y. Jiao, F. Jiao, J. Stuart, L.R. Donahue, W.G. Beamer, X. Li, B.A. Roe, M.S. Ledoux, W. Gu. Effects of carbonic anhydrase VIII deficiency on cerebellar gene expression profiles in the wdl mouse. Neurosci Lett. 414, 196-201 (2007).
239. E.E. Thompson, H. Kuttab-Boulos, L. Yang, B.A. Roe, A. Di Rienzo. Sequence diversity and haplotype structure at the human CYP3A cluster. Pharmacogenomics J. 6, 105-14 (2006).
238. M.L. Maitland, C. Grimsley, H. Kuttab-Boulos, D. Witonsky, K.E. Kasza, L. Yang, B.A. Roe, A. Di Rienzo. Comparative genomics analysis of human sequence variation in the UGT1A gene cluster. Pharmacogenomics J. 6, 52-62 (2006).
237. E.L. Dally, T.S.L. Barros, Y. Zhao, S.P. Lin, B.A. Roe, and R.E. Davis. Physical and Genetic Map of the Spiroplasma kunkelii CR2-3x Chromosome. Canadian J. Microbiology. 52, 857-867 (2006).
236. S.B. Cannon, L. Sterck, S. Rombauts, S. Sato, F. Cheung, J. Gouzy, X. Wang, J. Mudge, J. Vasdewani, T. Scheix, M. Spannagl, E. Monaghan, C. Nicholson, S.J. Humphray, H. Schoof, K.F. Mayer, J. Rogers, F. Quetier, G.E. Oldroyd, F. Debelle, D.R. Cook, E.F. Retzel, B.A. Roe, C.D.Town, S. Tabata, Y. Van de Peer, N.D. Young. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci U S A. 103, 14959-14964 (2006)
235. J.H. Larson, B.M. Marron, J.E. Beever, B.A. Roe, H.A. Lewin. Genomic organization and evolution of the ULBP genes in cattle. BMC Genomics. 7, 227-241 (2006).
234. G. Bakkeren, G. Jiang, R.L. Warren, Y. Butterfield, H. Shin, R. Chiu, R. Linning, J. Schein, N. Lee, G. Hu, D.M. Kupfer, Y. Tang, B.A. Roe, S. Jones, M. Marra and J.W. Kronstad. Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals Fungal Genet Biol. 43, 655-666 (2006).
233. T.A. Titus, D.R. Selvig, B. Qin, C. Wilson, A.M. Starks, B.A. Roe, J.H. Postlethwait. The Fanconi anemia gene network is conserved from zebrafish to human. Gene. 371, 211-223 (2006).
232. J. Mun, D.J. Kim, H.K. Choi, J. Gish, F. Debelle, J. Mudge, R. Denny, G. Endre, O. Saurat, A.M. Dudez, G. Kiss, B. Roe, N. Young, D. Cook. Distribution of microsatellites in the genome of Medicago truncatula: A resource of genetic markers that integrate genetic and physical maps. Genetics. 172, 2541-2555 (2006).
231. AF. Gillaspy, V. Worrell, J. Orvis, B. A Roe, D. W. Dyer, and J. J. Iandolo. The Staphylococcus aureus NCTC 8325 Genome in Gram-Positive Pathogens, 2nd Edition, V. A. Fischetti, R. P. Novick, J. J. Ferretti, D. A. Portnoy, J. I. Rood, eds. (Am. Soc. Micro. Press, Washington, D.C.) pp. 381-412 (2006).
230. Q. Zhang, U. Melcher, L. Zhou, F.Z. Najar, B.A. Roe, J. Fletcher. Genomic comparison of plant pathogenic and nonpathogenic Serratia marcescens strains by suppressive subtractive hybridization. Appl Environ Microbiol. 71, 7716-7723 (2005).
229. E.E. Thompson, H. Kuttab-Boulos, L. Yang, B.A. Roe, A. Di Rienzo. Sequence diversity and haplotype structure at the human CYP3A cluster. Pharmacogenomics J. 6, 105-114 (2005).
228. M.L. Maitland, C. Grimsley, H. Kuttab-Boulos, D. Witonsky, K.E. Kasza, L. Yang, B.A. Roe, A. Di Rienzo. Comparative genomics analysis of human sequence variation in the UGT1A gene cluster. Pharmacogenomics J. 6, 52-62 (2005).
227. M.S. Elshahed, F.Z. Najar, M. Aycock, C. Qu C, B.A. Roe, L.R. Krumholz. Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1. Appl Environ Microbiol. 71, 7598-7602 (2005).
226. Q. Luo, L.R. Krumholz, F.Z. Najar, A.D. Peacock, B.A. Roe, D.C. White, EM.S. Elshahed. Diversity of the microeukaryotic community in sulfide-rich zodletone spring (Oklahoma). Appl Environ Microbiol. 71, 6175-84 (2005).
225. M. Kudo, M. Bao, A. D'Souza, F. Ying, H. Pan, B.A. Roe, W.M. Canfield. The alpha - and beta -subunits of the human UDP-N-acetylglucosamine: Lysosomal enzyme phosphotransferase are encoded by a single cDNA. J. Biol. Chem. 280, 36141-36149 (2005).
224. Y. Jiao, J. Yan, Y. Zhao, L.R. Donahue, W.G. Beamer, X. Li, B. Roe, M. Ledoux, W. Gu. Carbonic anhydrase-related protein VIII deficiency is associated with a distinctive lifelong gait disorder in waddles mice. Genetics. 171, 1239-1246 (2005).
223. J. Mudge, S.B. Cannon, P. Kalo, G.E. Oldroyd, B.A. Roe, C.D. Town, N.D. Young. Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana. BMC Plant Biol. 5:15 (2005).
222. N.D. Young, S.B. Cannon, S. Sato, D. Kim, D.R. Cook, C.D. Town, B.A. Roe, S. Tabata. Sequencing the Genespaces of Medicago truncatula and Lotus japonicus. Plant Physiol. 137, 1174-81 (2005).
221. R.E. Davis, E.L. Dally, R. Jomantiene, Y. Zhao, B. Roe, S. Lin, J. Shao. Cryptic plasmid pSKU146 from the wall-less plant pathogen Spiroplasma kunkelii encodes an adhesin and components of a type IV translocation-related conjugation system. Plasmid. 53, 179-90 (2005).
220. X. He, V.P. Dave, Y. Zhang, X. Hua, E. Nicolas, W. Xu, B.A. Roe, D.J. Kappes. The zinc finger transcription factor Th-POK regulates CD4 versus CD8 T-cell lineage commitment. Nature. 433, 826-33 (2005).
219. Y. Zhang, M.A. Mian, K. Chekhovskiy, S. So, D. Kupfer, H. Lai, B.A. Roe. Differential gene expression in Festuca under heat stress conditions. J Exp Bot. 56, 897-907 (2005).
218. R.U. Palaniappan, Y.F. Chang, C.F. Chang, M.J. Pan, C.W. Yang, P. Harpending, S.P. McDonough, E. Dubovi, T. Divers, J. Qu J, B. Roe. Evaluation of lig-based conventional and real time PCR for the detection of pathogenic leptospires. Mol Cell Probes. 19, 111-7 (2005).
217. Y. Jiao, X. Li, W.G. Beamer, J. Yan, Y. Tong, D. Goldowitz, B. Roe, W. Gu. A deletion causing spontaneous fracture identified from a candidate region of mouse Chromosome 14. Mamm Genome. 16, 20-31 (2005).
216. J.A. Bedell, M.A. Budiman, A. Nunberg, R.W. Citek, D. Robbins, J. Jones E. Flick, T. Rholfing, J. Fries, K. Bradford, J. McMenamy, M. Smith, H. Holeman, B.A. Roe, G. Wiley, I.F. Korf, P.D. Rabinowicz, N. Lakey, W.R. McCombie, J.A. Jeddeloh, R.A. Martienssen. Sorghum genome sequencing by methylation filtration. PLoS Biol. 3, e13 (2005).
215. S.B. Cannon, J.A. Crow, M.L. Heuer, X. Wang, E.K. Cannon, C. Dwan, A.F. Lamblin, J. Vasdewani, J. Mudge, A. Cook, J. Gish, F. Cheung, S. Kenton, T.M. Kunau, D. Brown. G.D. May, D. Kim, D.R. Cook, B.A. Roe, C.D. Town, N.D. Young, E.F. Retzel. Databases and Information Integration for the Medicago truncatula Genome and Transcriptome. Plant Physiol. 138, 38-46 (2005).
214. R. Robledo, P. Bender, J. Leonard, B. Zhu, K. Osoegawa, P. de Jong, X. Xu, Z. Yao and B. Roe. The immunoglobulin variable light-chain region in primates has been shaped by multiple, independent, small-scale and large-scale insertion/deletion events. Genomics 84, 678-685 (2004).
213. E.E. Thompson, H. Kuttab-Boulos, D. Witonsky, L. Yang, B.A. Roe, A. Di Rienzo. CYP3A Variation and the Evolution of Salt-Sensitivity Variants. Am J Hum Genet. 75, 1059-1069 (2004).
212. O. Kulikova, R. Geurts, M. Lamine, D.J. Kim, D.R. Cook, L. Leunissen, H. de Jong, B.A. Roe, T. Bisseling. Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula. Chromosoma. 113, 276-283 (2004).
211. D. M. Kupfer, S. D. Drabenstot, K.L. Buchanan, H. Lai, H. Zhu, D.W. Dyer, B.A. Roe, J.W. Murphy. Introns and splicing elements of five diverse fungi. Eukaryot Cell. 3, 1088-1100 (2004).
210. L.A. Lyons, D.S. Biller, C.A. Erdman, M.J. Lipinski, A.E. Young, B.A. Roe, B. Qin, R.A. Grahn. Feline polycystic kidney disease mutation identified in PKD1. J Am Soc Nephrol. 15, 2548-55 (2004).
209. B.A. Roe, C. Lau, S. Oommen, J. Li, A. Hua, H.S. Lai, S. Kenton, J. White, H. Wang. Comparative analysis of human chromosome 22q11.1-q12.3 with syntenic regions in the chimpanzee, baboon, bovine, mouse, pufferfish, and zebrafish genomes. Cold Spring Harb Symp Quant Biol. 68, 265-274 (2003).
208. U.M. Raghavan, Palaniappan, Y-F. Chang, F. Hassan, S. P. McDonough, M. Pough, S. C. Barr, K. W. Simpson, H. O. Mohammed, S. Shin, P. McDonough, R. L. Zuerner, J. Qu and B. Roe. Expression of leptospiral immunoglobulin-like protein by Leptospira interrogans and evaluation of its diagnostic potential in a Kinetic Enzyme Linked Immunosorbent Assay. Journal of Medical Microbiology 53, 975-984 (2004).
207. H.K. Choi, D. Kim, T. Uhm, E. Limpens, H. Lim, J.H. Mun, P. Kalo, R.V. Penmetsa, A. Seres, O. Kulikova, B.A. Roe, T. Bisseling, G.B. Kiss and D.R. Cook. A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa. Genetics. 166, 1463-1502 (2004).
206. A Plis-Finarov, H. Hudson, B. Roe, M. Ron, E. Seroussi E. Mapping of the GATA4, NEIL2, FDFT1 genes and CTSB-associated microsatellites to the centromeric region of BTA8. Animal Genetics 35, 154-155 (2004).
205. Y. Zhao, H. Wang, R.W. Hammond, R. Jomantiene, Q. Liu, S. Lin, B.A. Roe, and R.E. Davis. Predicted ATP-binding cassette systems in the phytopathogenic mollicute Spiroplasma kunkelii. Molecular Genetics and Genomics. 271, 325-338 (2004).
204. M. S. Elshahed, F. Z. Najar, B. A. Roe, A. Oren, T. A. Dewars and L. R. Krumholz. Survey of Archaeal Diversity Reveals an Abundance of Halophilic Archaea in a Low-Salt, Sulfide- and Sulfur-Rich Spring. Applied and Environmental Microbiology. 2230-2239 (2004).
203. B. Roe. Shotgun Library Construction for DNA Sequencing in Methods in Molecular Biology, vol 255: Bacterial Artificial Chromosomes, Volume 1: Library Construction, Physical Mapping, and Sequencing. S. Zhao and M. Stodolsky, eds., Humana Press Inc, Totowa, New Jersey pp. 171-187 (2004).
202. B. A. Roe and D. M. Kupfer. Sequencing Gene Rich Regions of Medicago truncatula, a Model Legume in Molecular Breeding of Forage and Turf. A. Hopkins, Z.Y. Yang, R. Mian, M. Sledge and R.E. Barker, eds., Kluwer Academic Publishers, The Netherlands, pp. 333-344 (2004).
201. J.M. Ane, G.B. Kiss, B.K. Riely, R.V. Penmetsa, G.E. Oldroyd, C. Ayax, J. Levy, F. Debelle, J.M. Baek, P. Kalo, C. Rosenberg, B.A. Roe, S.R. Long, J. Denarie, and D.R. Cook. Medicago truncatula DMI1 required for bacterial and fungal symbioses in legumes. Science. 303, 1364-1367 (2004).
200. Y. Zhao, R.W. Hammond, I.-M. Lee, B.A. Roe, S. Lin, and R.E. Davis. Cell division gene cluster in Spiroplasma kunkelii: functional characterization of ftsZ and the first report of ftsA in Mollicutes. DNA and Cell Biology 23, 127-134 (2004).
199. H.K. Choi, J.H. Mun, D.J. Kim, H. Zhu, J.M. Baek, J. Mudge, B. Roe, N. Ellis, J. Doyle, G. B. Kiss, N. D. Young, and D. R. Cook. Estimating genome conservation between crop and model legume species. Proc. Natl. Acad. Sci. USA. 101, 15289-15294 (2004).
198. A Grahn, D. S. Biller, A. E. Young, B. A. Roe, B. Qin and L. A. Lyons. Genetic testing for feline polycystic kidney disease. Animal Genetics, 35, 503-504 (2004).
197. M. Ron, I. Tager-Cohen, E. Feldmesser, E. Ezra, D. Kalay, B. Roe, E. Seroussi and J. I. Weller. Bovine umbilical hernia maps to the centromeric end of Bos taurus autosome 8. Animal Genetics, 35, 431-437 (2004).
196. U. DeSilva, X. Guo, D.M. Kupfer, S.C. Fernando, A.T.V. Pillai, F.Z. Najar, S. So, G.Q. Fitch and B.A. Roe. Allelic variants of ovine prion protein gene (PRNP) in Oklahoma sheep. Cytogenetics and Genome Research. 102, 89-94 (2003).
195. C.M. Hansson, H. Ali, C.E. Bruder, I. Fransson, S. Kluge, B. Andersson, B.A. Roe, U. Menzel and J.P. Dumanski. Strong conservation of the human NF2 locus based on sequence comparison in five species. Mamm Genome. 14, 526-536 (2003).
194. S. Drabensctot, D. Kupfer, J. White, D. Dyer, B. Roe, K. Buchanan and J. Murphy. FELINES: A Utility for Extracting and Examining EST-Defined Introns and Exons. Nucleic Acid Research. 31, E141 (2003).
193. Y. Zhao, R.W. Hammond, R. Jomantiene, E.L. Dally, I.M. Lee, H. Jia, H. Wu, S. Lin, P. Zhang, S. Kenton, F.Z. Najar, A. Hua, B. A. Roe, J. Fletcher and R. E. Davis. Gene content and organization of an 85-kb DNA segment from the genome of the phytopathogenic mollicute Spiroplasma kunkelii. Mol Genet Genomics. 269, 592-602 (2003).
192. M.S. Elshahed, J.M. Senko, F.Z. Najar, S.M. Kenton, B.A. Roe, T.A. Dewers, J.R. Spear and L. R. Krumholz. Bacterial Diversity and Sulfur Cycling in a Mesophilic Sulfide-Rich Spring Applied and Environmental Microbiology. 69, 5609-5621 (2003).
191. W. Li, Q. Zhang, N. Oiso, E. K. Novak, R. Gautam, E. P. OBrien, C. L. Tinsley, D. J. Blake, R. A. Spritz, N. G. Copeland, N. A. Jenkins, D. Amato, B. A. Roe, M. Starcevic, E. C. DellAngelica, R. W. Elliott, V. Mishra, S. F. Kingsmore, R. E. Paylor and R. T. Swank Hermansky-Pudlak syndrome type 7 (HPS-7) results from mutations in dysbindin, a dystrobrevin-interacting protein and a member of the biogenesis of lysosome-related organelles complex 1 (BLOC-1) Nature Genetics. 35, 84-89 (2003).
190. J.E. Horvath, C.L. Gulden, J.A. Bailey, C. Yohn, J.D. McPherson, A. Prescott, B. A. Roe, P.J. De Jong, M. Ventura, D. Misceo, N. Archidiacono, S. Zhao, S. Schwartz, M. Rocchi, and E.E. Eichler. Using a Pericentromeric Interspersed Repeat to Recapitulate the Phylogeny and Expansion of Human Centromeric Segmental Duplications. Mol Biol Evol. 29, 1463-1479 (2003).
189. X. Guo, D.M. Kupfer, G.Q. Fitch, B.A. Roe, U. DeSilva U. Identification of a novel lysine-171 allele in the ovine prion protein (PRNP ) gene. Animal Genetics, 34(4), 303-305 (2003).
188. D. P. Locke, N. Archidiacono, D. Misceo, M. F. Cardone, S. Deschamps, B. Roe, M. Rocchi and E. E. Eichler. Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster. Genome Biology 4(8):R50 (2003).
187. S. Deschamps, J. Meyer, G. Chatterjee, H. Wang, P. Lengyel and B.A. Roe The mouse Ifi200 gene cluster: genomic sequence, analysis, and comparison with the human HIN-200 gene cluster. Genomics 82, 34-46 (2003).
186. W.K. Gu, X.M. Li, B.A. Roe, K.H.W. Lau, B. Edderkaoui, S. Mohan, and D.J. Baylink. Application of Genomic Resources and Gene Expression Profiles to Identify Genes That Regulate Bone Density. Current Genomics 4, 63-74 (2003).
185. Q. Zhang, B. Zhao, W. Li, N. Oiso, E.K. Novak, M.E. Rusiniak, R. Gautam, S. Chintala, E.P. O'Brien, Y. Zhang, B.A. Roe , R.W. Elliott, E.M. Eicher, P. Liang, C. Kratz, E. Legius, R.A. Spritz, T.N. O'Sullivan, N.G. Copeland, N.A. Jenkins, and R.T. Swank. Ru2 and Ru encode mouse orthologs of the genes mutated in human Hermansky-Pudlak syndrome types 5 and 6. Nature Genetics 33, 145-153 (2003).
184. J.B. Li, S. Lin, H. Jia, H. Wu, B.A. Roe, D. Kulp, G.D. Stormo and S.K. Dutcher. Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III. J Eukaryot Microbiol 50, 145-55 (2003).
183. T.I. Gan, L. Rowen, R. Nesbitt, B.A. Roe, H. Wu, P. Hu, Z. Yao, U.J. Kim, T. O'Sickey and M. Bina. Genomic organization of human TCF12 gene and spliced mRNA variants producing isoforms of transcription factor HTF4. Cytogenet Genome Res 98, 245-8 (2002)
182. R. Robledo, S. Orru, A. Sidoti, R. Muresu, D. Esposito, M.C. Grimaldi, C. Carcassi, A. Rinaldi, L. Bernini, L. Contu, M. Romani, B. Roe, and M. Siniscalco. A 9.1-kb Gap in the Genome Reference Map Is Shown to Be a Stable Deletion/Insertion Polymorphism of Ancestral Origin. Genomics 80, 585-592 (2002).
181. R. H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, et al. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520 - 562 (2002).
180. D. Ajdic, W. M. McShan, R. E. McLaughlin, G. Savic, J. Chang, M. B. Carson, C. Primeaux, R. Tian, S. Kenton, H. Jia, S. Lin, Y. Qian, S. Li, H. Zhu, F. Najar, H. Lai, J. White, Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. B. A. Roe, and J. J. Ferretti. Proceeding National Academy Science 99, 14434-14439 (2002).
179. J. Kone, J. Arroyo, T. Savinelli, S. Lin, K. Boyd, Y. Wu, M. Nimmakayalu, N.G. Copeland, N.A. Jenkins, M. Qumsiyeh, P. Hu, A. Prescott, H. Wu, L. Yang L, B.A. Roe and A.S. Perkins. F-MuLV acceleration of myelomonocytic tumorigenesis in SV40 large T antigen transgenic mice is accompanied by retroviral insertion at Fli1 and a novel locus, Fim4. Leukemia 16(9):1827-34 (2002)
178. K. Sossey-Alaoui, G. Su, E. Malaj, B.A. Roe and J.K. Cowell. WAVE3, an actin-polymerization gene, is truncated and inactivated as a result of a constitutional t(1;13)(q21;q12) chromosome translocation in a patient with ganglioneuroblastoma. Oncogene 21(38):5967-74 (2002)
177. E.S. Srivatsan, R. Chakrabarti, K. Zainabadi, S.D. Pack, P. Benyamini, M.S. Mendonca, P.K. Yang, K. Kang, D. Motamedi, M.P. Sawicki, Z. Zhuang, R.A. Jesudasan, U. Bengtsson, C. Sun, B.A. Roe, E.J. Stanbridge, S.P. Wilczynski and J.L. Redpath. Localization of deletion to a 300 Kb interval of chromosome 11q13 in cervical cancer. Oncogene 21(36):5631-42 (2002)
176. K. Rithidech, J.J. Dunn, B.A. Roe, C.R. Gordon and E.P. Cronkite. Evidence for two commonly deleted regions on mouse chromosome 2 in gamma ray-induced acute myeloid leukemic cells. Exp Hematol 30(6):564-70 (2002)
175. H. Wang, B. Ding, C.J. Liu, X.Y. Ma, S. Deschamps, B.A. Roe and P. Lengyel. The Increase in Levels of Interferon-Inducible Proteins p202a and p202b and RNA-Dependent Protein Kinase (PKR) During Myoblast Differentiation Is Due to Transactivation by MyoD: Their Tissue Distribution in Uninfected Mice Does Not Depend on Interferons. J Interferon Cytokine Res 22(6):729-37 (2002)
174. J. J. Iandolo, V. Worrell, K.H. Groicher, Y. Qian, R. Y. Tian, S. Kenton, A. Dorman, H-G. Jia, S. Lin, P. Loh, S. Qi, H. Zhu and B.A. Roe. Comparative analysis of the genomes of the temperate bacteriophages phi 11, phi 12 and phi 13 of Staphylococcus aureus 8325. Gene May 1;289(1-2):109-118 (2002).
173. Q. Zhang, W. Li, E.K. Novak, A. Karim, V.S. Mishra, S.F. Kingsmore, B.A. Roe, T. Suzuki and R.T. Swank. The gene for the muted (mu) mouse, a model for Hermansky-Pudlak syndrome, defines a novel protein which regulates vesicle trafficking. Hum Mol Genet 11(6):697-706 (2002).
172. G. Szalai, G. Duester, R. Friedman, H. Jia, S. Lin, B.A. Roe and M.R. Felder. Organization of six functional mouse alcohol dehydrogenase genes on two overlapping bacterial artificial chromosomes. Eur J Biochem 269(1):224-232 (2002).
171. R.E. Broughton, J.E. Milam and B.A. Roe. Complete Nucleotide Sequence of the Zebrafish (Danio rerio) Mitochondrial Genome and Evolutionary Patterns in Vertyebrate Mitochondrial DNA. Genome Research 11, 1958-1967 (2001).
170. T. Suzuki, W. Li, Q. Zhang, E.K. Novak, E.V. Sviderskaya, A. Wilson, D. C. Bennett, B.A. Roe, R.T. Swank and R.A. Spritz. The gene mutated in cocoa mice, carrying a defect of organelle biogenesis, is a homologue of the human Hermansky-Pudlak syndrome-3 gene. Genomics 78(1-2):30-7 (2001).
169. I Tapia-Paez, M. Kost-Alimova, P. Hu, B.A. Roe, E. Blennow, L. Fedorova, S. Imrek, and J.P. Dumanski. The position of t(11;22)(q23;q11) constitional translocation breakpoint is conserved among its carriers. Human Genetics. 109, 167-177 (2001).
168. O. B. Chernova, A. Hunyadi, E. Malaj, H. Pan, C. Crooks, B. Roe and J. K. Cowell. A novel member of the WD-repeat gene family, WDR11, maps to the 10q26 region and is disrupted by a chromosome translocation in human glioblastoma cells. Oncogene 20, 5378-5392 (2001).
167. T.K. Footz, P. Brinkman-Mills, G.S. Banting, S.A. Maier, M. A. Riazi, L. Bridgland, S. Hu,, B. Birren, S. Minoshima, N. Shimizu, H.Q. Pan, T. Nguyen, F. Fang, Y. Fu, L. Ray, H. Wu, S. Shaull, S. Phan, Z. Yao, F. Chen, A. Hua, P. Hu, Q. Wang, P. Loh, S. Qi, B.A. Roe and H.E. McDermid. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: A search for candidate genes at or near the human chromosome 22 pericentromere. Genome Research 11, 1053-1070 (2001).
166. M. Levine, A. Progulske-Fox, N.D. Denslow, W.G. Farmerie, D.M Smith, W.T. Swearingen, F.C. Miller, Z. Liang, B.A. Roe and H-Q. Pan. Identification of Lysine decarboxylase as a Mammalian Cell Growth Inhibitor in Eikenella corrodens: Possible Role in Periodontal Disease. Microbial Pathogens 30, 179-192 (2001).
165. W. Ji, F. Chen, T. Do, A. Do, B. A. Roe and M. H. Meisler. DQX1, an RNA dependent ATPase homolog with a novel DEAQ box: expression pattern and genomic sequence comparison of the human and mouse genes. Mammalian Genome 12, 456-461 (2001).
164. J.J. Ferretti, W.M. McShan, D. Ajdic, D. J. Savic, G. Savic, K. Lyon, S. Sezate, A. N. Suvorov, C. Primeaux, S. Kenton, H. Lai, S. Lin, Y. Qian, H. Jia, H. Zhu, Q. Ren, F.Z, Najar, L. Song, J. White, X. Yuan, S. W. Clifton, B. A. Roe, R. McLaughlin. Complete Genome Sequence of an M1 Strain of Streptococcus pyogenes Proc. Natl. Acad. Sci. USA. 98, 4658-4663 (2001).
163. H. Zhu, M. Nowrousian, D. Kupfer, H.V. Colot, G. Berrocal-Tito, H. Lai, D. Bell-Pedersen, B.A. Roe, J.J. Loros, J.C. Dunlap. Analysis of Expressed Sequence Tags From Two Starvation, Time-of-Day-Specific Libraries of Neurospora crassa Reveals Novel Clock-Controlled Genes. Genetics. 157, 1057-1065 (2001).
162. E.S. Lander, J. Rogers, R. H. Waterson, T. Hawkins, R. Gibbs, Y. Sakaki, J. Weissenbach, D. R. Smith, A. Rosenthal, H. Yang, L. Hood, R. W. Davis R. M. Myers, M. V. Olson, N. Shimizu, G. A. Evans, B. A. Roe, J. Ramser, W. R. McCombie, H. Blocker, R. Agarwala, F. Collins and other members of the International Human Genome Sequencing Consortium. Initial Sequencing and Analysis of the Human Genome. Nature 409, 860-921 (2001).
161. E. Dawson , Y. Chen, S. Hunt, L.J. Smink, A. Hunt, K. Rice, S. Livingston, S. Bumpstead, R. Bruskiewich, P, Sham, R. Ganske, M. Adams, K. Kawasaki, N. Shimizu, S. Minoshima, B. Roe, D. Bentley, I. Dunham. A SNP Resource For Human Chromosome 22: Extracting Dense Clusters of SNPs from the Genomic Sequence. Genome Research, 11, 170-178 (2001).
160. E. Kitamura, G. Su, K. Sossey-Alaoui, E. Malaj, J. Lewis, H. Pan, L. Hawthorn, B.A. Roe and J. K. Cowell A transcription map of the minimally deleted region from 13q14 in B-cell chronic lymphocytic leukemia as defined by large scale sequencing of the 620 kb critical region. Oncogene, 19, 5772-5780 (2000).
159. P.L. Strissel, R. Strick, R.J. Tomek, B.A. Roe, J.D. Rowley and N.J. Zeleznik-Le. DNA structural properties of AF9 are similar to MLL and could act as recombination hot spots resulting in MLL/AF9 translocations and leukemogenesis. Human Molecular Genetics, 9, 1671-1679 (2000).
158. M. Pletcher, B. A. Roe, F. Chen, T. Do, A. Do, E. Malaj and R. Reeves. Chromosome evolution: The junction of mammalian chromosomes in the formation of mouse chromosome 10. Genome Research. 10, 1463-1467 (2000).
157. A Raas-Rothschild, V. Cormier-Daire, M. Bao, E. Genin, R. Salomon, K. Brewer, M. Zeigler, H. Mandel, S. Toth, B. Roe, A. Munnich, and W.M. Canfield. Molecular basis of variant pseudo-hurler polydystrophy. J. Clinical Investigation 105, 673-681 (2000).
156. M. Siniscalco, R. Robledo, S. Orru, L. Contu, P. Yadav, Q. Ren, H. Lai, and B. Roe. A plea to search for deletion polymorphism through genome scans in populations. Trends in Genetics 16, 435-467 (2000).
155. Tapia-Paez, K.P. O'Brien, M. Kost-Alimova, S. Sahlen S, D. Kedra, C.E. Bruder, B. Andersson, B.A. Roe, P. Hu, S. Imreh, E. Blennow, and J.P. Dumanski. Fine mapping of the constitutional translocation t(11;22). Hum. Genet. 106, 506-516 (2000).
154. C.J. Liu, H. Wang, Z. Zhao, S. Yu, Y. Lu, J. Meyer, G, Chatterjee, S. Deschamps, B.A. Roe, and P. Lengyel. MyoD-Dependent Induction during Myoblast Differentiation of p204, a Protein Also Inducible by Interferon. Mol. Cell. Biol. 20, 7024-7036 (2000).
153. P.L. Strissel, R. Strick, T.J. Tomek, B.A. Roe, J.D. Rowley and N.J. Zeleznik-Le. DNA structural properties of AF9 are similar to MLL and could act as recombination hot spots resulting in MLL/AF9 translocations and leukemogenesis. Human Molecular Genetics. 9, 1671-1679 (2000).
152. H. Kurahashi, T.H. Shaikh, P. Hu, B.A. Roe, B.S. Emanuel, and M.L. Budarf. Regions of genomic instability on 22q11 and 11q23 as the etiology for the recurrent constitutional t(11;22) Human Molecular Genetics 9, 1665-1670, (2000).
151. R.J. Moreland, M.E. Dresser, J.S. Rodgers, B.A. Roe, J.W. Conaway, R.C. Conaway and J.S. Hanas. Identification of a transcription factor IIIA-interacting protein. Nucleic Acids Research 28, 1986-1993 (2000).
150. J. R. Korenberg, X-N. Chen, H. Hirota, Z. Lai, U. Bellugi, D. Burian, B. Roe and R. Matsuoka. Genome Structure and Cognitive Map of Williams Syndrome. J. Cognitive Neuroscience 12, 89-107, 2000.
149. D. V. Santi, M. A. Siani, B. Julien, D. Kupfer and B. Roe. An approach genes: a search for the epothilone gene cluster. Gene 247, 97-102 (2000).
148. M.A. Riazi, P. Brinkman-Mills, T. Nguyen, H. Pan, S. Phan, F. Ying, B. A. Roe, J. Tochigi, Y. Shimizu, S. Minoshima, N. Shimizu, M. Buchwald, and H.E. McDermid. The human homologue of insect-direved growth factor, CECR1, is a candidate gene for features of cat eye syndrome. Genomics 64, 277-285 (2000).
147. M. Luijten, Y.P. Wang, B.T. Smith, A. Westerveld, L.J. Smink, I, Dunham, B.A. Roe and T.J. Hulsebos. Mechanism of spreading of the highly related neurofibromatosis type 1 (NF1) pseudogenes on chromosomes 2, 14 and 22. European Journal of Human Genetics 8, 209-214 (2000).
146. K.L. Hester, J. Lehman, F. Najar, L. Song, B.A. Roe, C.H. MacGregor, P.W. Hager, P.V. Phibbs and J.R. Sokatch. Crc Is Involved in Catalobite Repression Control of the bkd Operons of Pseudomonas putida and Pseudomonas aeruginosa. J. Bacteriology 182, 1144-1149 (2000).
145. J. Lund, F. Chen. A. Hua, B. Roe, M. Budarf, B.S. Emanuel and R.H. Reeves. Comparative Sequence Analysis of 634Kbp of the Mouse Chromosome 16 Region of Conserved Synteny with the Human Velocardiofacial Region of Chr 22q11.2. Genomics 63. 374-383 (2000).
144. T.H. Shaikh, H. Kurahashi, S.C. Saitta, A. M. O'Hare, P. Hu, B.A. Roe, D.A. Driscoll, D.M. McDonald-McGinn, E.H. Zackai, M.L. Budarf and B.S. Emanuel. Chromosome 22-specific low copy repeats and the 22q11.2 deletion syndrome: genomic organization and deletion endpoint analysis. Human Molecular Genetics, 9(4), 489-501 (2000).
143. G. Glusman, A. Sosinsky, E, Ben-Asher, N. Avidan, D. Sonkin, A. Bahar, A. Rosenthal, S. Clifton, B. Roe, C. Ferraz, J. Demaille, and D. Lancet. Sequence, Structure, and Evolution of a Complete Human Olfactory Receptor Gene Cluster. Genomics 63(2): 227-245 (2000).
142. J.Y. Zhou, B. Fogelgren, Z. Wang, B. A. Roe and J. A. Biegel. Isolation of genes from the rhabdoid tumor deletion region in chromosome band 2q11.2 Gene 241, 133-141 (2000).
141. I Dunham, N. Shimizu, B.A. Roe, S. Chissoe, et. al. The DNA Sequence of Human Chromosome 22. Nature 402, 489-495 (1999).
140. E. Seroussi, D. Kedra, H.-Q. Pan, M. Peyrard, C. Schwartz, P. Scambler, D. Donnai, B.A. Roe, and J.P.Dumanski. Duplications on human chromosome 22 reveal a novel Ret Finger Protein Like (RFPL) gene family with sense and endogenous antisense transcripts. Genome Research 9, 803-814 (1999)
139. A Johnson, S. Minoshima, S. Asakawa, N. Shimizu, H. Shizuya, B.A. Roe and H.E. McDermid. A 1.5 Mb contig within the cat eye syndrome critical region at human chromosome 22q11.2. Genomics 57, 306-309 (1999)
138. E. Seroussi, D. Kedra, M. Kost-Alimova, A.-C. Sandberg-Nordqvist, I. Fransson, J. F. M. Jacobs, Y. Fu, H.-Q. Pan, B. A. Roe, S. Imreh and Jan P. Dumanski. TOM1 Genes Map to Human Chromosome 22q13.1 and Mouse Chromosome 8C1 and Encode Proteins Similar to the Endosomal Proteins HGS and STAM. Genomics, 57, 380-388 (1999).
137. D.M. Kupfer, A.K. Chaturvedi, D.V. Canfield and B.A. Roe. PCR-Based Identification of Postmortem Microbial Contaminants - a Preliminary Study. J. Forensic Sciences 44, 592-596 (1999).
136. A.C.C. Wong, D. Shkolny, A. Dorman, D. Willingham, B. A. Roe, H. F. Mcdermid. Two Novel Human RAB Genes with Near Identical Sequence Each Map to a Telomere-Associated Region: The Subtelomeric Region of 22q13.3 and the Ancestral Telomere Band 2q13. Genomics 59, 326-334 (1999).
135. J. Lund, B. Roe, F. Chen, M. Budarf, N. Galili, R. Riblet, R.D. Miller, B. Emanuel and R.H. Reeves. Sequence-ready physical map of the mouse Chromosome 16 region with conserved synteny to the human Velocardiofacial Syndrome region on 22q11.2. Mammalian Genome10, 438-443 (1999).
134. T.H. Shaikh, S. Gottlieb, B. Sellinger, B.A. Roe, F. Chen, R.J. Oakey, B.S. Emanuel and M.L. Budarf. Characterization of CDC45L:a Gene in the 22q11.2 Deletion Region Expressed during Murine and Human Development. Mammalian Genome 10, 322-326(1999).
133. W. Jang, A. Hua, S. V. Spilson, W. Miller, B. A. Roe, and M. H. Meisler, Comparative sequencing of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Research 9, 53-61 (1999).
132. G. Glusman, D. Sharon, F. Kalush, S. Clifton, B. Roe, C. Ferraz, J. Demaille, E. Ben-Asher and D. Lancet. Genome Dynamics, Polymorphisms and Mutations in a 350 kb Human Olfactory Receptor Gene Cluster. Mathematical Modelling and Scientific Computing 9, 30-44 (1998).
131. M. Atlas, D. Head, F. Behm, E. Schmidt, N.H. Zeleznik-Lee, B.A. Roe, D. Burian and P.H. Domer. Cloning and sequence analysis of four t(9:11) therapy-related leukemia breakpoints. Leukemia 12, 1895-1902 (1998).
130. D. Kersulyte, N. S. Akopyants, S. W. Clifton, B. A. Roe and D. E. Berg. Novel sequence organization and insersion specificity of IS605 and IS606; chimaeric transposable elements of Helicobacter pylori. Gene 223, 175-186 (1998).
129. S.C. Guru, P. Manickam, J.S. Crabtree, S.E. Olufemi, S.K. Agarwal, L.V. Debelenko, Z.Zhuang, I.A. Lubensky, M.B. Kester, Y.S. Kim, C. Heppner, J.M. Weisemann, M.S. Boguski, B.A. Roe, A.L. Burns, L.A. Liotta, A.M. Speigel, M.R. Emmert-Buck, S.J. Marx, F.S. Collins and S.C. Chandrasekharappa. Identification and characterization of the multiple neoplasia type 1 (MEN1) gene. J. Internal Medicine 243, 433-439 (1998).
128. C. Pusch, Z Wang, B. Roe and N. Blin. Unidirectional orientation of twelve expressed tagged sites within 40 kb of human chromosomal region 22q13.1. J. Applied Genetics 39, 199-204 (1998).
127. E. Seroussi, H.Q. Pan, D. Kedra, B.A. Roe BA, and J.P. Dumanski. Characterization of the human NIPSNAP1 gene from 22q12: a member of a novel gene family. Gene 212, 13-20 (1998).
126. C. Pusch, E. Hustert, D. Pfeifer, P. Sudbeck, R. Kist, B. Roe, Z. Wang, R. Balling, N. Blin, G. Scherer The SOX10/Sox10 gene from human and mouse: sequence, expression, and transactivation by the encoded HMG domain transcription factor. Human Genetics 103, 115-123 (1998).
125. D. Kedra, H.Q. Pan, E. Seroussi, I. Fransson, C. Guilbaud, J.E. Collins, I. Dunham, E. Blennow, B.A. Roe, F. Piehl, and J.P. Dumanski. Characterization of the human synaptogyrin gene family. Human Genetics 103, 131-141 (1998).
124. N. A. Akopyants, S. W. Clifton, D. Kersulyte, J. E. Crabtree, B. E. Youree, C. A. Reece, B. A. Roe and D. E. Berg. Analysis of the cag Pathogenicity Island of Helicobacter pylori. Molecular Microbiology 28, 37-53 (1998).
123. L.A. Lewis, K.H. Rohde, B. Behrens, E. Gray, S.I. Toth, B.A. Roe and D.W. Dyer. Identification and molecular analysis of lbpBA, encoding the two component meningococcal lactoferrin receptor. Infect. Immun. 66, 3017-3023 (1998),
122. Poltorak, I. Smirnova, X. He, M.-L. Liu, C. Van Huffel, D. Birdwell, E. Alejos, M. Silva, X. Du, P. Thompson, E.K.L. Chan, J. Ledesma, B. Roe, S. Clifton, S. Vogel, B. Beutler. Mapping of the Lps Locus: Identification of the Toll-4 Receptor as a Candidate Gene in the Critical Region. Blood Cells, Molecules, & Diseases 24, 340-355 (1998).
121. A.C.K. Chung, D.S. Durica, S.W. Clifton, B.A. Roe and P.M. Hopkins. Cloning of crustacean ecdysteroid receptor and retinoid-X receptor gene homologs and elevation of retinoid-X receptor mRNA by retinoic acid. Molec. Cellular Endocrinology 139, 209-227 (1998).
120. S.W. Clifton and B.A. Roe. The beautifully simple but intriguingly complex world of small genomes. Genome Research 8, 331-333 (1998).
119. F. Duffieux, P. Peyret, B.A. Roe and C.P. Vivares. First Report on the Systematic Sequencing of the Small Genome of Encephalitozoon cuniculi (Protozoa, Microspora): Gene Organization of a 4.3 Kbp Region on Chromosome I. Microbial and Comparative Genomics 3, 1-11 (1998).
118. S-J. Xu, Y-P Wang, B. Roe and W. R. Pearson. Characterization of the human class-mu GSTM gene cluster and the polymorphic GSTM1 deletion. J. Biol. Chem. 273, 3517-3527 (1998).
117. L. A. Lewis, S. Clifton, B. A. Roe and D. W. Dyer. Browsing the genome of Neisseria gonorrhoeae: comparisions with other mucosal pathogens - current and emerging issues. Proceedings of The Second Annual Indiana Conference, May 28-31, 1997; Sidney Printing, pp. 117-138.
116. H.G. Super, P.L. Strissel, O.M. Sobulo, D. Burian, S.C Reshmi, B. Roe, N.J. Zeleznik-Le, M.O. Diaz and J.D. Rowley. Identification of complex genomic breakpoint junctions in the t(9;11) MLL-AF9 fusion gene in acute leukemia. Genes Chromosomes Cancer. 20, 185-195 (1997).
115. E. Goldmuntz, Fedon, J., Roe, B and Budarf, ML. Molecular Characterization of a Serine/Theronine Kinase in the DiGeorge Minimal Critical Region. Gene 198, 379-386 (1997).
114. L.A. Lewis, E. Gray, Y.P. Wang, B.A. Roe and D.W. Dyer. Molecular characterization of hpuAB, the haemoglobin-haptoglobin-utilization operon of Neisseria meningitidis. Molecular Microbiology 23, 737-49 (1997).
113. P.C. Giardina, L.A. Foster, S.I. Toth, B.A. Roe and D.W. Dyer. Analysis of the alcABC operon encoding alcaligin biosynthesis enzymes in Bordetella bronchiseptica. Gene 194,19-24 (1997).
112. J.J. Ferretti, B. A. Roe, S.W. Clifton, S.P. Lin, X. Wang, M. Zhan, A. Reece, A.N. Suvorov and W.M. McShan. The Streptococcus pyogenes genome sequencing project. A progress report. Advances in Experimental Medical Biology. 418, 961-963 (1997).
111. C. Guilbaud, M. Peyrard, I. Fransson, S.W. Clifton, B.A. Roe, N.P. Carter, and J.P. Dumanski. Characterization of the mouse beta-prime adaptin gene; cDNA sequence, genomic structure, and chromosomal localization. Mammalian Genome 8, 651-656 (1997).
110. P. Manickam, S. C. Guru, L. V. Debelenko, S. K. Agarwal, S-E Olufemi, J. M. Weisemann, M. S. Boguski, J. S. Crabtree, Y. Wang, B. A. Roe, I. A. Lubensky, Z. Zhuang, M. B. Kester, A. L. Burns, A. M. Spiegel, S. J. Marx, L. A. Liotta, M. R. Emmert-Buck, F. S. Collins, S. C. Chandrasekharappa. Eighteen new polymorphic markers in the multiple endocrine neoplasia type 1 (MEN1) region. Human Genetics 101:102-108 (1997)
109. S. C. Guru, S. E. Olufemi, P. Manickam, C. Cummings, L. M. Gieser, B. L. Pike, M. L. Bittner, Y. Jiang, A. C. Chinault, N. J. Nowak, A. Brzozowska, J. S. Crabtree, Y. Wang, B. A. Roe, J. M. Weisemann, M. S. Boguski, S. K. Agarwal, A. L. Burns, A. M. Spiegel, S. J. Marx, W. L. Flejter, P. J. deJong, F. S. Collins and S. C. Chandrasekharappa. A 2.8-Mb clone contig of the multiple endocrine neoplasia type 1 (MEN1) region at 11q13. Genomics 42, 436-445 (1997).
108. J. Flint, G.P. Bates, K. Clark, A. Dorman, D. Willingham, B. A. Roe, G. Micklem, D. R. Higgs and E. J. Louis. Sequence Comparison of Human and Yeast Telomeres Identifies Structurally Distinct Subtelomeric Domains. Human Molecular Genetics 8, 1305-1314 (1997).
107. C. Chieffo, N. Garvey, B. Roe, G. Zhang, L. Silver, B.S. Emanuel and M.L. Budarf. Isolation and characterization of a gene from the DiGeorge chromosomal region (DGCR) homologous to the mouse Tbx1 gene. Genomics 43, 267-277 (1997).
106. D. M. Kupfer, C. A. Reece, S. W. Clifton, B. A. Roe and R. A Prade. Multicellular Ascomycetous Fungal Genomes Contain More Than 8000 Genes. Fungal Genetics and Biology 21, 364-372 (1997).
105. S. C. Guru, S. K. Agarwal, P. Manickam, S. E. Olufemi, J. S. Crabtree, J. M. Weisemann, M. B. Kester, Y. S. Kim, Y. Wang, M. R. Emmert-Buck, L. A. Liotta, A. M. Spiegel, M. S. Boguski, B. A. Roe, F. S. Collins, S. J. Marx, L. Burns, and S. C. Chandrasekharappa. A transcript map for the 2.8-Mb region containing the multiple endocrine neoplasia type 1 locus. Genome Research 7, 725-735 (1997).
104. S. Gottlieb, B. S. Emanuel, D. A. Driscoll, B. Sellinger, Z. Wang, B. Roe and M. L. Budarf. The DiGeorge Syndrome Minimal Critical Region Contains a Goosecoid-like Homeobox Gene which is Expressed Early in Human Development. Am. J. Human Genetics 60, 1194-1201(1997).
103. A.G. Elkahloun, D. B. Krizman, Z. Wang, T. A. Hofmann, B. Roe, P. S. Meltzer. Transcript Mapping in a 46-kb Sequenced Region at the Core of 12q13.3 Amplification in Human Cancers. Genomics 42, 295-301 (1997).
102. W. Gong, B.S. Emanuel, N. Galili, D.H. Kim, B. Roe, D. Driscoll, and M.L. Budarf. Structural and mutational analysis of a conserved gene (DGSI) from the minimal DiGeorge syndrome critical region. Human Molecular Genetics 6, 267-276 (1997).
101. S.E. Holmes, M.A. Riazi, W. Gong, H.E. McDermid, B. Sellinger, A. Hua, F. Chen,Z. Wang, G. Zhang, B.A. Roe, I. Gonzalez, D.M. McDonald-McGinn, E. Zackai, B.S.Emanuel and M.L. Budarf. Disruption of the clathrin heavy chain-like gene (CLTCL) associated with features of DGS/VCFS: a balanced (21;22)(p12;q11) translocation. Human Molecular Genetics 6, 357-367 (1997).
100. S. C. Chandrasekharappa, S. C. Guru, P. Manickam, S-E. Oluferni, F. S. Collins, M. R. Emmert-Buck, L. V. Debelenko, S. Zhuang, I A. Lubensky, L. A. Liotta, J. S. Crabtree, Y. P. Wang, B. A. Roe, J. Weisemann, Mark S. Boguski, S. K. Agarwal, M B. Kester, Y. S. Kim, C. Heppener, Q Dong, A. M. Spiegel, A. L. Burns, and S. J. Marx. Positional Cloning of the Gene for Multiple Endocrine Neoplasia-Type1. Science 276, 404-407 (1997).
99. N. Gaili, H.S. Baldwin, J. Lund, R. Reeves, W. Gong, Z. Wang, B. Roe, M.L. Budarf, B.S. Emanuel, S. Nayak, C. Mickanin and C.A. Buck. A region of mouse chromosome 16 is syntenic to the DiGeorge, velocardiofacial Genome Research 7, 17-26 (1997).
98. D. Burian, G. Zhang, F. Chen and B. A. Roe. Reduced Volume AmpliTaq DNA Polymerase FS Cycle Sequencing Reactions in the Robbins CyclePlate 384. Innovations. 5, 1-3 (1997).
97. G. Glusman, S. Clifton, B. Roe and D. Lancet. Sequence analysis in the olfactory receptor gene cluster on human chromosome 17: recombinatorial events affecting receptor diversity. Genomics 37, 147-160 (1996)
96. J.L. Winston, S.I. Toth, B.A. Roe and D.W. Dyer. Cloning and characterization of the Actinobacillus actinomycetemcomitans gene encoding a heat shock protein 90 homologue. Gene 179, 199-204 (1996).
95. C. Pusch, R. Mullenbach, P. Gott, H. Schmitt, Z. Wang, B. Roe and N. Blin. Cosmid-derived transcripts and sequence tags mapped to three subregions of human chromosome 22. Gene 183, 29-33 (1996)
94. A.S. Khan, B.R. Taylor, D.P. Ringer and B.A. Roe. Identification and Molecular Cloning of Differentially Expressed Sequence Tags from Human Small Cell Lung Cancer. Genome Science and Technology. 1, 47-50 (1996).
93. S. Lorain, S. Demczuk, V. Lamour, S. Toth, A. Aurias, B.A. Roe and M. Lipinski. Structural Organization of the WD Repeat Protein-encoding Gene HIRA in the DiGeorge Syndrome Critical Region of Human Chromosome 22. Genome Res. 6: 43-50 (1996).
92. M. Peyrard, H.Q. Pan, D. Kedra, I. Fransson, S. Swahn, K. Hartman, S.W. Clifton, B.A. Roe and J.P. Dumanski. Structure of the promoter and genomic organization of the human beta'-adaptin gene (BAM22) from chromosome 22q12. Genomics 36, 112-117 (1996).
91. C. Pusch, Z. Wang, B. Roe and N. Blin, Genomic structure of the RNA polymerase II small subunit (hRPB14.4) locus(POLRF) and mapping to 22q13.1 by sequence identity. Genomics 34, 440-442 (1996)
90. W. Gong, B. S. Emanuel, J. Collins, D. H. Kim, Z. Wang, Feng Chen, G. Zhang, B. Roe and M. L. Budarf. A transcriptional map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11. Human Molecular Genetics 5, 789-800 (1996).
89. E. Goldmuntz, Z. Wang, B. A. Roe and M. L. Budarf. Cloning, Genomic Organization, and Chromosomal Localization of Human Citrate Transport Protein to the DiGeorge/Velocardiofacial Syndrome Minimal Critical Region. Genomics 33, 271-276 (1996)
88. D. Kedra, M. Peyrard, I. Fransson, J. E. Collins, I. Dunham, B. A. Roe and J. P. Dumanski. Characterization of a second human clathrin heavy chain polypeptide gene (CLH-22) from chromosome 22q11. Human Molecular Genetics 5, 625-631 (1996).
87. X. Wu, C. E. Robinson, H. W. Fong, J. Crabtree, R. R. Rodriquez, B. A. Roe and J. M. Gimble. Cloning and Characterization of the Murine Activin Receptor Like Kinase- (ALK-1) Homolog. Biochem. Biophys. Res. Comm. 216, 78-83 (1995).
86. M. E. Ellexson, G. Zhang, D. Stweart, M. Lau, G. Tersi, P. Terasaki, B. Roe and W. Hildebrand. Nucleotide sequence analysis of HLA-B*1523 and B*8101. Dominant alpha-helical motifs produce complex serologic recognition patterns for the HLA-B"DT" and HLA-B"NM5" antigens. Human Immunology. 44, 103-110 (1995).
85. N. Heisterkamp, M. P. Mulder, A. Langeveld, J. Ten Hoeve, Z. Wang, B. A. Roe and J. Groffen. Localization of the Human Mitochondrial Citrate Transporter Protein Gene to Chromosome 22q11 in the DiGeorge Syndrome Critical Region. Genomics. 39, 451-456 (1995)
84. N.T. Ma, Y.F. Yang, B.A. Roe and R.G. Harrison. Cloning and Expression of a-Human Atrial Naturiuretic Peptide in Escherichia coli by Fusion of L-Asparaginase. Biotechnology and Bioengineering 47, 483-491 (1995).
83. P.C. Giardina, L.A. Roster, S.I. Toth, B. A. Roe and D.W. Dyer. Identification of alcA, a Bordetella bronchiseptica gene necessary for alcaligin production. Gene 167, 133-136 (1995).
82. S. L. Chissoe, A. Bodenteich, Y.F. Wang, Y.P. Wang, D. Burian, S.W. Clifton, J. Crabtree, A. Freeman, K. Iyer, L. Jian, Y. Ma, H.J. McLaury, H.Q. Pan, O.H. Sarhan, S. Toth, Z. Wang, G. Zhang, N. Heisterkamp, J. Groffen, and B.A. Roe. Sequence and Analysis of the Human c-abl Gene, the bcr Gene, and Regions Involved in the Philadelphia Chromosomal Translocation. Genomics 27, 67-82 (1995).
81. M. L. Budarf, J. Collins, W. Gong, B. Roe, Z. Wang, B. Sellinger, D. Michaud, D. A. Driscoll, and B. S. Emanuel. The Cloning, Sequencing, and Analysis of a Balanced Translocation t(2;22)(q14;q11.21) Associated with DiGeorge Syndrome. Nature Genetics 10, 269-279 (1995).
80. D.R. Toal, D. R., S.W. Clifton, B.A. Roe and J. Downard. The esg locus of Myxococcus xanthus encodes the E1a and E1[beta] subunits of a branched-chain keto acid dehydrogenase. Molec. Micro. 16, 177-189 (1995).
79. V. Baud, S. L. Chissoe, E. Viegas-Pequignot, S. Diriong, V. C. N'Guyen, B. A. Roe and M. Lipinski. EMR1, an Unusual Member in the Family of Hormone Receptors with Seven Transmembrane Segments. Genomics 26, 334-344 (1995).
78. J. Ballard, J. Crabtree, B. A. Roe and R. K. Tweten. The primary structure of Clostridium septicum alpha toxin exhibits similarity with Aeromonas hydrophila aerolysin. Infect. Immun. 63, 340-344 (1995).
77. X. Wu, C. E. Robinson, H. W. Fong, J. S. Crabtree, B. R. Rodriguez, B. A. Roe and J. M. Gimble. Cloning and Characterization of the Murine Activin Receptor Like Kinase-1 (ALK-1) Homolog. Biochem. and Biophys. Res. Comm. 216, 78-83 (1995)
76. H. Q. Pan, Y. P. Wang, S. L. Chissoe, A. Bodenteich, Z. Wang, K. Iyer, S. W. Clifton, J. S. Crabtree and B. A Roe. The complete nucleotide sequences of the pSacBII P1 cloning vector and three cosmid cloning vectors: pTCF, svPHEP, and LAWRIST16. Genetic Analysis Techniques and Applications 11, 181-186 (1994).
75. C. R. Valentine, M. J. Heinrich, S. L. Chissoe and B. A. Roe. DNA Sequence of Direct Repeats of sulI Gene of Plasmid pSa. Plasmid 32, 222-227 (1994).
74. S. W. Clifton, D. McCarthy and B. A. Roe. Sequence of the rec-2 locus of Haemophilus influenzae homologies to comE-ORF3 of Bacillus subtilis and msbA of Escherichia coli. Gene 146, 95-100 (1994)
73. A Bodenteich, S. Chissoe, Y.F. Wang and B.A. Roe. Shotgun cloning as the strategy of choice to generate templates for high throughput dideoxynucleotide sequencing. in Automated DNA Sequencing and Analysis Techniques. M. D. Adams, C. Fields, C. Venter, eds. (Academic Press, London) pp. 42-50 (1994).
72. D. J. Smith, H. Zhu, P. R. Kolatkar, L.-T. Tam, T. O. Baldwin, B. A. Roe , A. F. Riggs and R. H. Broyles. The Hemoglobins of the Bullfrog, Rana catesbeiana. The c-DNA derived amino acid sequence of the alpha chain of adult component B: There roles in deoxygenation-induced aggregation. J. Biol. Chem. 268, 26961-26971 (1993).
71. Z. Wang, B.A. Roe, K. Nicholas and R. White. Metal carbonyl labels for oligonucleotide analysis by Fourier transform infrared spectroscopy. J.A.C.S. 115, 4399-4400 (1993).
70. M. J. White, B. Fristensky, D. Falconet, L. C. Childs, J. C. Watson, L. Alexander, B. A. Roe and W. F. Thompson. Expression of the chlorophyll a/b protein multigene family in pea (Pisum sativum L.): Evidence for distinct developmental responses. Planta 188, 190-198 (1992).
69. R. Y. Hsu, M. J. Glynias, J. Satterlee, R. Feeney, A. R. Clarke, D. C. Emery, B. A. Roe, R. K. Wilson, A. G. Goodridge & J. J. Holbrook. Duck liver 'malic' enzyme. Expression in Escherichia coli and characterization of the wild-type enzyme and site-directed mutants. Biochem J 284, 869-76 (1992).
68. Labidi, E. Mardis, B. A. Roe and R. J. Wallace. Cloning and DNA Sequence of the Mycobacterium fortuitum biovar fortuitum Plasmid pAL5000. Plasmid 27, 130-140 (1992).
67. S. L. Chissoe, Y.F. Wang, S.W. Clifton, N. Ma, H.J. Sun, J. S. Lobsinger, S. M. Kenton, J. D. White and B. A. Roe. Strategies for Rapid and Accurate DNA Sequencing. Methods: A Companion to Methods In Enzymology. 3, 55-65 (1991).
66. L. Alexander, D. Falconet, B. W. Fristensky, M. H. White, J. C. Watson, B. A. Roe and W. F. Thompson. Nucleotide sequence of Cab-8, a new type I gene encoding a chlorophyll a/b-binding protein of LHCII in Pisum. Plant Molecular Biology 17, 523-526 (1991).
65. H.-Y. Tsen, S.-J. Wang, B. A. Roe and S. S. Green. DNA sequence of a Salmonella-specific DNA fragment and the use of oligonucleotide probes for Salmonella detection. Appl. Microbio. Biotechnol. 35(3), 339-347 (1991).
64. C. K. Stover, D. P. Marana, J. M. Carter, B. A. Roe, E. Mardis and E. V. Oaks. The 56 Kilodalton Major Protein Antigen of Reckettsia tsutsugamushi: Molecular Cloning and Sequence Analysis of the sta56 Gene, and Precise Identification of a Strain Specific Epitope. Infect. and Immun. 58, 2076-2084 (1990).
63. E.R. Mardis and B.A. Roe. Automated Methods for Single-Stranded DNA Isolation and Dideoxynucleotide DNA Sequencing Reactions on a Robotic Workstation. BioTechniques 7, 840-850 (1989).
62. R.K. Wilson and B.A. Roe. The presence of the hypermodified nucleotide ms2i6A prevents codon misreading by E. coli tRNA. Proc. Natl. Acad. Sci. USA 86, 409-413 (1989).
61. B. A. Roe. Computer Programs for Molecular Biology: An Overview of DNA Sequencing and Protein Analysis Packages. BioTechniques 6, 560-565, (1988).
60. S. Khan and B. A. Roe. Aminoacylation of synthetic DNAs corresponding to E. coli tRNAPhe and E. coli tRNALys, Science 241, 74-79 (1988).
59. T. Yamamoto, I.A. Watkinson, L. Kim, M. V. Sage, R. Stratton, N. Akande, Y. Li, D. P. Ma and B. A. Roe. Nucleotide sequence of the gene coding for a 130-kDa mosquitocidal protein of Bacillus Thuringiensis israelensis. Gene 66, 107-120 (1988).
58. B.A. Roe, L. Johnston-Dow and E. Mardis. Use of a chemically modified T7 DNA polymerase for manual and automated sequencing of supercoiled DNA, BioTechniques 6, 520, (1988).
57. L.A. Johnston-Dow, E. Mardis, C. Heiner and B.A. Roe. Optimized Methods for Fluorescent and Radio-labeled DNA Sequencing. BioTechniques 5, 754-765 (1987).
56. Z. Zehner, Y. Li, B.A. Roe, B.H. Patterson and C.M. Sax. The Chicken Vimentin Gene: Nucleotide Seq., Regulatory Elements and Comparison to the Hamster Gene. J. Biol. Chem. 262, 8112-8120 (1987).
55. M. S. Gilmore, D. Behnke, B. A. Roe and D. B. Clewell. Molecular-Level Characterization of the Streptococcus faecalis Plasmid pAD1 Hemolysin/Bacteriocin Determinant in Streptococcal Genetics. J. J. Ferretti and R. Curtiss III, eds. (Am. Soc. Micro. Press, Washington, D.C.) pp.153-158 (1987).
54. E. Shtivelmen, B. Lifshitz, R.P. Gale, B.A. Roe and E. Canaani. Alternative splicing of RNAs transcribed from the human abl gene and from the bcr-abl fused gene. Cell 47, 277-284 (1986).
53. R.K. Wilson, T. Brown and B.A. Roe. Nucleotide sequence of pheW; a third gene for E. coli tRNAPhe. Nucl. Acids Res. 14, 5937 (1986)._
52. A.J.L. Clark, L. Beguinot, S. Ishii, D.P. Ma, B.A. Roe, G.T. Merlino and I. Pastan. Synthesis of epidermal growth factor (EGF) receptor in vitro using SP6 RNA polymerase-transcribed template mRNA. Biochim. Biophys. Acta 867, 244-251 (1986).
51. S. Ishii, Y.H. Xu, R.H. Stratton, B.A. Roe, Glenn T. Merlino and I. Pastan. Characterization and sequence of the promoter region of the human epidermal growth factor receptor gene. Proc. Natl. Acad. Sci. USA 82, 4920-4924 (1985).
50. R. Callahan, I.M. Chiu, J.F.H. Wong, S.R. Tronick, B.A. Roe, S. A. Aaronson and J. Schlom. A New Class of Endogenous Human Retroviral Genomes. Science 228, 208-1211 (1985).
49. G.T. Merlino, S. Ishii, J. Whang-Peng, T. Knutsen, Y. Xu, A.J.L. Clark, R.H. Stratton, R.K. Wilson, D.P. Ma, B.A. Roe, J.H. Hunts, N. Shimizu and I. Pastan. Structure and Localization of the Genes Encoding the Aberrant and Normal Epidermal Growth Factor Receptor RNAs from A431 Human Carcinoma Cells. Molecular and Cellular Biology 5, 1722-1734 (1985).
48. B. A. Roe, D.P. Ma, R.K. Wilson and J.F. H. Wong. The Complete Nucleotide Sequence of the Xenopus laevis Mitochondrial Genome. J. Biol. Chem. 260, 9759-9774 (1985).
47. H. Malke, B.A. Roe and J.J. Ferretti. Nucleotide Sequence of the Streptokinase Gene from Streptococcus equisimilis H46A. Gene 34, 357-362 (1985).
46. G.T. Merlino, Y. Xu, N. Richert, S. Ishii, A.J.L. Clark, R.H. Stratton, R.K. Wilson, D.P. Ma, B.A. Roe and I. Pastan. Cloning and Characterization of Human Epidermal Growth Factor-Receptor Gene Sequences in A431 Carcinoma Cells in Cancer Cells: Growth Factors and Transformation. J. Feramisco, B. Ozanne and C. Stiles, eds. (Cold Spring Harbor Press, Cold Spring Harbor, N.Y.) pp. 19-24 (1985).
45. Y. Xu, S. Ishii, A.J.L. Clark, M. Sullivan, R.K. Wilson, D.P. Ma, B.A. Roe, G.T. Merlino and I. Pastan. Human Epidermal Growth Factor Receptor cDNA is Homologous to a Variety of RNAs Overproduced in A431 Carcinoma Cells. Nature 309, 806-810 (1984).
44. D.P. Ma, E. Lund, J.E. Dahlberg, and B.A. Roe, Nucleotide Sequences of Two Regions of the Human Genome Containing tRNAAsn Genes. Gene 28, 257-262 (1984).
43. I Schwartz, R.A. Klotsky, D. Elseviers, P.J. Gallagher, M.Krauskopf, M.A.Q. Siddiqui, J.F.H. Wong and B.A. Roe. Molecular Cloning and Sequencing of pheU, a Gene for E. coli tRNAPhe. Nucl. Acids Res. 11, 4379-4389 (1983).
42. J.F.H. Wong, D.P. Ma, R.K. Wilson and B.A. Roe, DNA Sequence of theXenopus laevis Mitochondrial H- and L-Strand Rep. Origins and Flanking tRNA Genes. Nucl. Acids Res. 11, 4977-4995 (1983).
41. B.A. Roe, J.F.H. Wong, E.Y. Chen, P.W. Armstrong, A. Stankiewicz, D.P. Ma and J. McDonough. Mammalian Mitochondrial tRNAs: A Modified Nucleotide 3' to the Anticodon May Modulate Their Codon Response in Mitochondrial Genes, P. Slonimski, P. Borst and G. Attardi, eds. (Cold Spring Harbor Press, Cold Spring Harbor, N.Y.) pp. 45-49 (1982).
40. S. Anderson, A.T. Bankier, B.G. Barrell, M.H.L. deBruijn, A.R. Coulson, J. Drouin, I.C. Eperon, D.P. Nierlich, B.A. Roe, F. Sanger, P.H. Schreier, A.J.H. Smith, R. Staden and I.G. Young. Comparison of the Human and Bovine Mitochondrial Genomes in Mitochondrial Genes. P. Slonimski, P. Borst and G. Attardi, eds. (Cold Spring Harbor Press, Cold Spring Harbor, N.Y.) pp. 5-43 (1982).
39. S. Anderson, A.T. Bankier, B.G. Barrell, M.H.L. de Bruijn, A.R. Coulson, J. Drouin, I.C. Eperon, D.P. Nierlich, B.A. Roe, F. Sanger, P.H. Schreier, A.J.H. Smith, R. Staden and I.G. Young. Sequence and Organization of the Human Mitochondrial Genome. Nature 290, 457-465 (1981).
38. D.P. Ma, W.C. Merrick and B.A. Roe The Ribothymidine Content of Mammalian Elongator tRNAs Modulates Ternary Complex Ribosomal A Site Binding in Biochemistry of S-Adenosylmethionine and Related Compounds. E. Usdin, R.T. Borchardt and C.R. Creveling,eds. (Macmillin Press, London) pp. 385-388 (1982).
37. A.B. DiLella, B.A. Roe and A.W. Steggles. Alterations in Rabbit Liver Protein Synthesis as a Result of PB Treatment. Biochem. Biophys. Res. Comm. 98, 628-634 (1981).
36. M. Bina, M.F. Radonovich and B.A. Roe. Fractionation of Simian Virus 40 DNA Fragments by RPC-5 Column Chromatography. Analytical Biochem. 114, 105-111 (1981).
35. B.A. Roe, J.F.H. Wong, E.Y. Chen and P.W. Armstrong, Sequence Analysis of Mammalian Mitochondrial tRNAs in Recombinant DNA, Proc. Third Cleveland Symposium on Macromolecules. A.G. Walton, ed.(Elsevier Pub. Co., Amsterdam) pp.167-176 (1981).
34. H.Y. Tsen and B.A. Roe. No effect of Ribothymidine Contents of Mammalian tRNAPhe's on Aminoacylation and tRNA-Ribosome Binding. Proc. Natl. Sci. Counc. B. ROC, 5, 297-303 (1981).
33. R.C. Gupta, B.A. Roe, and K. Randerath. The Sequence of Human Glycine tRNA(Anticodon CCC). Determination by a Newly Developed Thin-Layer Readout Sequencing Technique and Comparison with other Glycine tRNA. Biochemistry 19, 1699-1705 (1980).
32. N.H. Woo, B.A. Roe, and A. Rich. Crystal Structure of E. coli. tRNAMetf: Conformation of Initiator Transfer RNA Molecules. Nature 286, 346-351 (1980).
31. B.G. Barrell, S. Anderson, A.T. Bankier, M.H.L. de Bruijn, E. Chen, A.R. Coulson, J. Drouin, I.C. Eperon, D.P. Nierlich, B.A. Roe, F. Sanger, P.H. Schreier, A.J.H. Smith, R. Staden, and I.G. Young. Different Pattern of Codon Recognition by Mammalian Mitochondrial tRNAs. Proc. Natl. Acad. Sci. USA 77, 3164-3166 (1980).
30. B.G. Barrell, S. Anderson, A.T. Bankier, M.H.L. de Bruijn, E. Chen, A.R. Coulson, J. Drouin, I.C. Eperon, D.P. Nierlich, B. Roe, F. Sanger, P.H. Schreier, A.J.H. Smith, R. Staden, and I.G. Young. Sequence of Human Mitochondrial DNA. Hoppe-Seyler's Z. Physiol. Chem. 361, 493-501 (1980).
29. E.Y. Chen and B.A. Roe. Structural Comparison of Human, Beef, Rat, and Walker 256 Carcinosarcoma Asparaginyl-tRNA. Biochem. Biophys. Acta 610, 272-284 (1980).
28. F. Sanger, A.R. Coulson, B.G. Barrell, A.J.H. Smith and B.A. Roe. Cloning in Single-stranded Bacteriophage as an Aid to Rapid DNA Sequencing. J. Molec. Biol. 143, 161-178 (1980).
27. M.H.L. de Bruijn, P.H. Schreier, I.C. Eperon, B.G. Barrell, E.Y. Chen, P.A. Armstrong, J.F.H. Wong and B.A. Roe. A Mammalian Mitochondrial Serine transfer RNA Lacking the"dihydro-uridine" Loop and Stem. Nucl. Acids Res. 8, 5213-5222 (1980).
26. T.H. Rabbitts, P.H. Hamlyn, G. Mattyssens, and B.A. Roe. The Variability Arrangements, and Rearrangement of Immunoglobulin genes. Canadian Journal of Biochem 58, 176-187 (1980).
25. B.A. Roe, A.F. Stankiewicz, H.L. Rizi, C. Weisz, M.N. DiLauro, D. Pike, C.Y. Chen and E.Y. Chen. Comparison of Rat Liver and Walker 256 Carcinosarcoma tRNAs. Nucl. Acids Res. 6, 673-688 (1979).
24. H.Y. Tsen and B A. Roe. The Effect of T[Psi]CGp Tetranucleotide and Puromycin on the Binding of Mammalian tRNAPhe to Rat Liver Ribosomes. J. Chinese Biochemical Soc. 8, 67-72 (1979).
23. R.C. Gupta, B.A. Roe, and K. Randerath. The Nucleotide Sequence of Human tRNAGly. Nucl. Acids Res. 7, 959-970 (1979).
22. E.Y. Chen and B.A. Roe. The Application of PEI-Cellulose Thin Layer Chromatography for the Resolution of Large Oligonucleotide Fragments of tRNA. Analytical Biochem. 89, 45-59 (1978).
21. M. Kratovich and B.A. Roe. Improved Separation of Nucleosides, Nucleotides, and Aminoacyl tRNA on a Strong Anion Exchange Resin. J. Chromatography 155, 407-413 (1978).
20. E.Y. Chen and B.A. Roe. The Nucleotide Sequence of Rat Liver tRNAAsn. Biochem. Biophys. Res. Comm. 82, 235-246 (1978).
19. B.A. Roe, A.F. Stankiewicz and C.Y. Chen. Chromatographic Behavior of Several Mammalian tRNAs on Acylated Dihydroxyl-Borate Cellulose and Aminex A-28. Nucl. Acids Res. 4, 2191-2204 (1977).
18. B.A. Roe and H.Y Tsen. Role of Ribothymidine in Mammalian tRNAPhe. Proc. Natl. Acad. Sci. USA 74, 3696-3700 (1977).
17. E.Y. Chen and B.A. Roe. Sequence Studies on Human Placenta tRNAVal: Comparison with the Mouse Myeloma tRNAVal. Biochem. Biophys. Res. Comm. 78, 631-640 (1977).
16. E.Y. Chen and B.A. Roe. A Two-Dimensional Thin Layer Chromatographic Procedure for the Sequential Analysis of Oligonucleotides Employing Tritium Post-Labeling. Nucl. Acids Res. 4, 3563-3572 (1977).
15. B.A. Roe, E.Y. Chen and H.Y. Tsen. Studies on the Ribothymidine Content of Specific Rat and Human tRNAs:A Postulated Role for m5Cytosine. Biochem. Biophys. Res. Comm. 68, 1339-1347 (1976).
14. A Gillum, B. Roe, M.P.J.S. Anandaraj and U.L. RajBhandary. Nucleotide Sequence of Human Placenta Cytoplasmic Initiator tRNA. Cell 6, 407-413 (1975).
13. B Roe. Studies on Human tRNA. I. The Rapid, Large Scale Isolation and Partial Fractionation of Placenta and Liver tRNA. Nucl. Acids Res. 2, 21-42 (1975).
12. M.P.J.S. Anandaraj and B. Roe. Purification of Human Placenta Phenylalanine, Valine, Methionine, Glycine, and Serine Transfer Ribonucleic Acids. Biochemistry.14, 5068-5073 (1975).
11. B.A. Roe, M.P.J.S. Anadaraj, L.S.Y. Chia, E. Randerath, R.C. Gupta and K. Randerath. Sequence Studies on tRNA-Phe from Human Placenta: Comparison with Known Sequence of tRNA-Phe from other Normal Mammalian Tissues. Biochem. Biophys. Res. Comm. 66,1097-1105 (1975).
10. R. Williams, W. Nagel, B. Roe and B. Dudock. Nucleotide Sequence of E. coli tRNAAla1. Biochem. Biophys. Res. Comm. 60, 1215-1221 (1974).
9. B. Roe, K. Marcu and B. Dudock. The Isolation and Sequence Analysis of tRNA: The Use of Plaskon Chromatography (RPC-5). Biochem. Biophys. Acta. 319, 25-36 (1973).
8. B. Roe, M. Sirover and B. Dudock. Kinetics of Homologous and Heterologous Aminoacylation with Yeast Phenylalanyl Transfer Ribonucleic Acid Synthetase. Biochemistry12, 4146-4154 (1973).
7. B. Roe, M. Michael and B. Dudock. The Role of N2 Methylguanine in the Yeast Phenylalanyl-tRNA Recognition Site. Nature New Bio. 246, 135-138 (1973).
6. K. Marcu, R. Mignery, R. Rezelbach, B. Roe, M. Sirover, and B. Dudock. TheAbsence of Ribothymidine in Eukaryotic tRNA. Biochem. Biophys. Res. Comm. 55, 477-483 (1973).
5. J. Stenesh and B.A. Roe. DNA Polymerase from Mesophilic and the Thermophilic Bacteria II - Nearest Neighbor Frequency Analysis of the Products of the Reaction Catalyzed by DNA Polymerase. Biochem. Biophys. Acta. 272, 167-178 (1972).
4. J. Stenesh and B.A. Roe. DNA Polymerase from Mesophilic and Thermophilic Bacteria I- Purification and Properties of the Enzyme. Biochem. Biophys. Acta. 272, 156-166 (1972).
3. B. Roe and B. Dudock. The Role of the Fourth Nucleotide from the 3' End in the Yeast Phenylalanyl tRNA Synthetase Recognition Site. Biochem. Biophys. Res. Comm. 49, 399-406 (1972).
2. B. Roe, M. Sirover, R. Williams and B. Dudock. New Heterologous Mischarging Reactions with Yeast Phenylalanyl-tRNA Synthetase. Arch. Biochem. and Biophys. 147, 176-177 (1971).
1. J. Stenesh, B.A. Roe and T.L. Snyder. Studies of the DNA from Mesophilic and Thermophilic Bacteria. Biochem. Biophys. Acta. 161, 442-454 (1968).

Published Abstracts - Bruce A. Roe

S. L. Pyle, A. S. Khan, Y-F. Wang, G. G. Bonner, J. S. Lobsinger and B. A. Roe. Methods to Sequence Cloned Human Genomic DNA. Abstracts of the Annual Meeting of the ASBMB, Abs. #3445 (1990).
A. S. Khan and B. A. Roe. The Ability of Synthetic DNAs to Interact with the Components of the Protein Synthesis System. Abstracts of the Annual Meeting of the American Society for Biochemistry and Molecular Biology, Abs. #1800 (1990).
A. S. Khan and B. A. Roe. Aminoacylation of Synthetic DNAs Corresponding to Escherichia coli Phe and Lys tRNA. Abstracts of the Annual Meeting of the ASBMB, Abs. #480 (1989).
E. Mardis and B. A. Roe. A Coordinated System for Large Scale DNA Sequencing, Abstracts of the Annual Meeting of the ASBMB, Abs. #1222, (1989).
A. S. Khan and B. A. Roe. Aminoacylation of Synthetic DNAs Corresponding to E. coli tRNA^Phe and E. coli tRNA^Lys. FASEB J. 2, A772 (1988).
E. Mardis and B. A. Roe. Automated Methods for Sanger Dideoxynucleotide Sequencing and Single Stranded DNA Isolation, FASEB J. 2, A1125 (1988).
A. G. Goodridge, M. J. Goldman, D. W. Black, J. E. Fisch, S. R. Stapleton, K. Kameda, B. A. Roe and R. K. Wilson. The Gene for Avian Fatty Acid Synthease. FASEB J. 2, A1327 (1988).
C. K. Stover, E. V. Oaks, Li Yue and B. A. Roe. Gene Sequence Analysis and Epitope Mapping of the Immundominant Scrub Typhus Antigen (Sta 56). Abstracts of the Annual Meeting of The American Society of Microbiology, Abs.#D1, p. 71, (1988).
A. Labidi, E. Mardis, B. Roe and R. J. Wallace, Jr. Nucleotide Sequence Analysis of a 5.0 Kilobase Plasmid from Mycobacterium Fortunitum. Abstracts of the Annual Meeting of The American Society of Microbiology, Abs.#U6, p. 133, (1988).
L. Johnston-Dow, R. Callahan and B. Roe. Nucleotide Sequence Analysis of Human Endogenous Retroviral Long Terminal Repeats. Fed. Proc. 46, 1949 (1987).
L.A. Johnston, J.F.H. Wong, R. Callahan and B.A. Roe. The Complete Nucleotide Sequence of a Human Endogeneous Retroviral-like Genome HLM-2. Fed. Proc. 45, 1982 (1986).
R.K. Wilson, A.S. Khan and B.A. Roe. Sequence and Expression of Natural and Synthetic tRNA^Phe Genes in E. coli. Fed. Proc. 45, 1701 (1986).
M.A. Almas, D.P. Ma, J.A. Tobin and B.A. Roe. Sequence and Expression of Mouse tRNA^Ile and tRNA^Ser and Human tRNA^Asn Genes. Fed. Proc. 45, 1771 (1986).
R.K. Wilson, D.P. Ma, M.A. Ahmed and B.A. Roe. In vitro Expression and Processing of Mitochondrial and Nuclear tRNA Genes. Fed. Proc. 44, 1773 (1985).
R.K. Wilson, D.P. Ma, J.F.H. Wong, M.A. Ahmed and B.A. Roe. Structure and Expression of Several Eucaryote, Procaryote and Organelle tRNA Genes. Fed. Proc. 43, 1558 (1984).
J.F. Wong, D.P. Ma, R.K. Wilson, and B.A. Roe. Nucleotide Sequence Analysis of Xenopus laevis Mitochondrial tRNA Genes. Fed. Proc. 42, 2440 (1983).
J.F.H. Wong, D.P. Ma, M. Stevens, and B.A. Roe. Modified Nucleotides and the Unique Codon Response of Bovine Mitochondrial tRNAs. Fed. Proc. 41, 1029 (1982).
B.A. Roe, J.F.H. Wong, D.P. Ma, and M. Stevens. Modified Nucleotides and the Unique Codon Response of Bovine Mitochondrial tRNAs. DNA 1, 185 (1982).
J.F.H. Wong, P. Armstrong, A. Stankiewicz, D.P. Ma, J. McDonough and B.A. Roe. Studies on Mammalian Mitochondrial tRNA. Fed. Proc. 40, 609 (1981).
E.Y. Chen, P. Armstrong, J. Wong, D.P. Ma, A. Stankeiwicz, C. Chen, J. Freeman, and B.A. Roe. Nucleotide Sequence Analysis of Mammalian Mitochondrial tRNAs. Fed. Proc. 39, 2023 (1980).
E.Y. Chen and B.A. Roe. The Lack of Q (and Q*) Nucleoside in Walker 256 Tumor tRNA and its Presence in the Anticodon of Specific Rat Liver tRNAs. Fed. Proc. 37, 1731 (1978).
B. A. Roe and H.Y. Tsen. The Role of RiboT in Mammalian tRNA^Phe. Fed. Proc. 36, 732 (1977).
B.A. Roe, R. Mignery, K. Marcu, M. Sirover, and B. Dudock. Absence of Ribothymidine in Specific tRNA's of Wheat Embryo. Fed. Proc. 32, 1585 (1973).
B.A. Roe, M. Sirover, and B. Dudock. On the Nature of the Yeast Phenylalanyl-tRNA Synthetase Recognition Site. Fed. Proc. 31, 450 (1972).

Ph.D Dissertations Directed:

Ellson Y. Chen, August 1977. "Sequence Analysis of Mammalian (Human) Transfer Ribonucleic Acids" Kent State University.
Hau-Yang. Tsen, November 1977 "The Biological Function of Ribothymidine of Mammalian Transfer Ribonucleic Acid in Protein Synthesis" Kent State University.
Din Pow Ma December 1981 "The Role of Ribothymidine in Eukarytote Elongator tRNAs and its Effect on Mammalian Protein Synthesis" Kent State University.
James F. H. Wong, December 1981 "Studies of Mammalian Mitochondrial tRNAs". Kent State University.
Richard K. Wilson, April 1986 "Cloning, Expression and Processing of Transfer RNA Genes" University of Oklahoma.
M. Almas Ahmed, December 1987 "Sequencing, Cloning In Vitro and In Vivo Expression of Mammalian Transfer RNA Genes" University of Oklahoma.
Leslie A. Johnston-Dow, August 1988 "Nucleotide Sequence Analysis of Human Endogenous Retroviral-Like Regions" University of Oklahoma.
Elaine Mardis, November 1989 "Automated Methods for DNA Isolation and Sequencing, and Their Implementation" University of Oklahoma.
Akbar S. Khan, December 1989 "Studies on Synthetic DNAs Corresponding to E. coli Phenylalanine and Lysine tRNAs" University of Oklahoma.
Sandra W. Clifton, December 1993 "Sequence of the rec-2 locus of Haemophilus influenzae" University of Oklahoma.
Stephanie L. Chissoe, May 1994 "Sequencing and Analysis of the Human C-Abl Gene, BCR gene, and Regions Involved in the Philadelphia Chromosomal Translocation" University of Oklahoma.
Zhili Wang, December 1994 "DNA Sequence in the DiGeorge Syndrome Critical Region and Metal Carbonyl Labels for FTIR Oligonucleotide Analysis" University of Oklahoma.
Omayma H. Sarhan, May 1995 "DNA Sequence and Analysis of the Abl and BCR Regions of Human Chromosomes 9 and 22" University of Oklahoma and Al Azhar University Medical School, Nasr City, Egypt.
HuaQin Pan, December 1996 "Half Million Bases of DNA Sequence in Two Meningioma Deletion Regions in Chromosome 22" University of Oklahoma.
Guozhong Zhang, January 1997 "Sequence and Analysis of the Human Chromosome 22 Band Q11 DiGeorge Syndrome Region" University of Oklahoma.
Judy S. Crabtree, March 1997 "Sequencing Analysis of Regions of Human Chromosomes 11 and 22: Meningioma (22), Cat Eye Syndrome (22) and Multiple Endocrine Neoplasia, Type 1 (11)" University of Oklahoma.
Feng Chen, September 1997 "Sequence and Analysis of the Human Chromosome 22 DGCR and Syntenic Regions of Mouse Chromosome 16" University of Oklahoma.
Dennis Burian, March 1998 "Sequence and Analysis of Cancer Related Genes from Three Genomic Regions, 9p21, 9p22,and 3p26" University of Oklahoma.
Axin Hua, May 1999 "Comparative Sequencing of Human and Mouse Syntenic Regions from DGCR and MND2" University of Oklahoma.
Doris Kupfer, August 1999 "Development, Analysis and Use of an Expressed Sequence Tag Database from the Multicellular Ascomycete, Aspergillus Nidulans" University of Oklahoma.
Qun Ren, May 2001, "Development and Analysis of an Expressed Sequence Tag Database from Fusarium sporotrichioides" University of Oklahoma.
Hua Zhu, July 2001, "Expression Profiles and the Identification of the Clock Controlled Genes in Two Time-of-Day-Specific cDNA Libraries of Neurospora crassa University of Oklahoma.
Fares Najar, March 2002, "Sequence and Analysis of Actinobacillus actinomycetemcomitans" University of Oklahoma.
Stephane D. Deschamps, April 2002, "Sequence and Analysis of Two Regions of Mouse Chromosome 1 Involved in Interferon Response and Bone Marrow Density Regulation" University of Oklahoma.
Sharon Lewis, October 2002, "Sequence and Analysis of the Working Draft of the Bacillus stearothermophilus Strain 10 Genome" University of Oklahoma.
Jami Milam, December 2003, "A Comparison of the Standard DNA Shotgun Sequencing Approach and the Exponential DNA Amplification Method for sequencing BAC, Plasmid, Fosmid and Mitochondrial DNA" University of Oklahoma.
Shelly K. Oommen, April 2006, "Comparative Analysis of Human Chromosome 22 CES-DGCR Syntenic Regions in Chimpanzee, Baboon, Bovine, Mouse and Zebrafish, and Expression Profiling in Zebrafish Early Developmental Stages using Whole Mount in situ Hybridization" University of Oklahoma.
Chyau-Yueh Christopher Lau, May 2006, "Multiple Species Comparative Analysis of Human Chromosome 22 Between Markers D22s1687 and D22s419 and Gene Expression Profiling in Zebrafish" University of Oklahoma.
Jiaxin Carson Qu, May 2007, "Sequence and Comparative Genomics of Leptospira interrogans serovar pomona and Leptosrira kirschneri serovar grippotyphosa" University of Oklahoma.
Ruihua Shi, May 2008, "Genomic Sequencing and Nitrogen Fixation Symbiosis Study of Sinorhizobium medicae a Symbiont of Medicago truncatula" University of Oklahoma.
Jianfeng Li, May 2008 "Comparative Analysis of Human Chromosome 22 NF2 Region and Gene Expression Profiling of Human Homologs in Zebrafish Early Developmental Stages via Whole Mount in situ Hybridization" University of Oklahoma.
Hung-Chun (James) Yu, May 2008, "Comparative and Functional Genomics Study of the Telomeric 7.73-Mb Region From Marker D22S418 Through D22S1726 On Human Chromosome 22" University of Oklahoma.
Iryna F. Sanders, June 2008, "Sequencing of Medicago truncatula Genome and Studies of Metabolic Gene Organization and Expression Profile" University of Oklahoma.
Shweta Deshpande, July 2008, "Sequencing Medicago truncatula Chromosome 4, Expression Profiling and Genomic Organization Of NBS-LRR Genes" University of Oklahoma.
Leonid Sukharnikov, July 2008, "Study of Microbial Communities at the Genomic Level" University of Oklahoma.
Majesta S. O-Bleness, July 2008, "Sequencing and Analysis of Medicago truncatula Chromosome 6 and Evolution of the RPG1 Resistance Cluster in Soybean" University of Oklahoma.
Jiaxi Quan, January 2009, "Characterization and Compartive Analysis on Metagenome Data from Plant RNA Virus Community" University of Oklahoma.
Jing Yi, January 2009, "The Medicago truncatula genome and analysis of nodule-specific genes" University of Oklahoma.
Graham Wiley, April 2009, "Direct getagenomic detection and analysis of plant viruses using an unbiased hight-throuhput sequencing approach" University of Oklahoma.
Simone Macmil, April 2009, "Sequencing and analysis of the expressed sequence tag libraries and genes of Phymatotrichopis omnivora" University of Oklahoma.

Thesis Masters Degrees Directed:

Martha Kratovich, August 1978 "Improved Methods for Isolation and Analysis of Oligonucleotides", Kent State University.
Shoiw Meei Chen, August 1978 "Purification, Isolation, and Characterization of Individual Rabbit Reticulocyte tRNAs", Kent State University.
Christina Chen, June 1977 "Studies on Human tRNA: Isolation, Chromatographic Behavior and Nucleotide Composition Analysis", Kent State University.
Ann Stankiewitz, July 1977 "Studies on the Modified Bases of Mammalian tRNA", Kent State University.
Colleen Weisz, August 1978 "Isolation and Characterization of tRNA from Normal and Mentally Retarded Individuals", Kent State University.
Lin Song, May 2004 "Sequencing the complete genome of Neisseria gonorrhoeae and identifying its encoded genes, University of Oklahoma.
Ricardo Godinez Moreno, June 2004, "DNA shotgun sequencing and genomic analysis of ~500,000 base pairs containined in eleven fosmids overlapping the Fusion/Histocompatability locus (Fu/HC) from the protochordate Botryllus schlosseri, University of Oklahoma and Universidad Nacional Autonoma de Mexico.

Undergraduate Honors Thesis Directed:

Marie DiLauro and Helen Rizi, June 1974 "Alterations in the tRNA Population of Walker 256 Tumor as Compared with Rat Liver" Kent State University.
Jennifer Freeman, August 1979 "A Comparison of the Major and Modified Nucleotides in Mouse Liver and Mouse Mammary Tumor Tissue tRNAs Kent State University.
Douglas Yunker, August 1979 "A General Method for Isolating Beef Liver tRNAs and Specifically tRNA^Asn for the Isolation of Z Nucleotide" Kent State University.
Bjorn Thorsrud, August 1980 "The Isolation of Radioactively Labeled Q-Nucleoside from E. coli" Kent State University.
Michaleen Annette Grecula, May 1981, "A Study on the Effect of Drug Treatment on Rabbit Liver tRNA Species" Kent State University.
Brian Youree, May 1995 "DNA Sequencing Strategy of the Olfactory Receptor Gene Region of Human Chromosome 17", University of Oklahoma.
Karen Hartman, May 1996, "DNA Sequencing Strategy of the Meningioma Deletion Regions of Human Chromosome 22", University of Oklahoma.
Camie A. Mullins, May 1996, "DNA Sequencing of the Tumor Suppressor Gene p16", University of Oklahoma.
Glenda Hall, December 1997, "Cat Eye Syndrome: Partial Trisomy of Chromosome 22", University of Oklahoma.
Yonathan Tilahun, December 1997, "DNA Sequencing Strategy and Discovering Genes of the Immunoglobulin Lignt Chain Region (IGLC) of Chromosome 22", University of Oklahoma.
Emily N. Huang, April 1997, "DNA Sequencing of the Human Chromosome 7q11.23 Region Involved in Williams Syndrome", University of Oklahoma.
Mueed Ahmad, May 1997, "DNA Sequencing Strategy for the AF-9 Leukemogenic Breakpoint Region of Huma Chromosome 9", University of Oklahoma.
Whitney L. Elkins, May 1997, "Human Chromosome 22: Breakpoint Cluster", University of Oklahoma.
Jennifer Lewis, May 1998, The Sequencing of a Cosmid Containing the Spermidine Synthase Gene from the Aspergillus nidulans Genome, University of Oklahoma
Chesca N. Craig, May 1998, Shotgun Sequencing the Staphlyococcus aureus genome, University of Oklahoma
Kevin Hill, December 1998, DNA Sequencing of the Human Chromosome 13 Region Indicated in B-Cell Chronic Lymphocytic Leukemia, University of Oklahoma
Joan Elizabeth Dolance, May 1999, "DNA Sequencing of Bacterial Artificial Chromosomes 77h2 and 357f7 From the Cat-Eye Syndrome Region of Human Chromosome 22", University of Oklahoma
Thuan Nguyen, May 1999, "DNA Sequencing Strategy of the Human Chromosome 22q11:Region Involved in Cat Eye Syndrome", University of Oklahoma
Jasson Cassidy, May 1999, Shotgun Sequencing of the GNAZ-BCR Region of the Mouse Chromosome 10", University of Oklahoma
Stephen Confer, May 1999, DNA Sequencing Strategy for the Actinobacillus actinomycetemcomitans Genome", University of Oklahoma
Phoebe Loh, May 1999, "Shotgun Sequencing in Human Chromosome 22", University of Oklahoma
Jeff Viken, May 1999, "The Methods and Relevance of Sequencing Cosmid 2H2 from the Filamentous Fungus Aspergillus nidulans", University of Oklahoma
Jaime Lynne Stone, May 1999, "DNA Sequencing of the Cat Eye Region of Human Chromosome 22 Including BACs 250a12, 678g6, and 128f11", University of Oklahoma.
Pilaan Pathipvanich, December 1999, "DNA Sequencing of the Streptococcus mutans strain UAB 159 and Preliminary Analysis of Genomic DNA", University of Oklahoma.
J. Andrew Duty, May 2000, "Shotgun Sequencing of Human Chromosome Insert BAC250a12", University of Oklahoma.
Stephen Wong, May 2000, "Sequencing Staphylococcus Aureus Bacterial Artificial Chromosome (BAC) g26 1-1", University of Oklahoma.
Stacey Phan, May 2000, "DNA Sequencing Strategy for the Region Involved in Cat Eye Syndrom of Human Chromosome 22", University of Oklahoma.
Elizabeth Perry, May 2000, "Shotgun Sequencing and Analysis of Bacillus stearothermophilus Strain 10 Genome", University of Oklahoma.
Tonya Nequaye, May 2000, "DNA Sequencing of Staphylococcus aureus", University of Oklahoma.
Matt Carson, May 2000, "Characterization of a MU Class Glutathione S-Transferase Gene Using Automated DNA Sequencing Strategies", University of Oklahoma.
Tamy E.C. Perng, May 2000, "Comparative sequence analysis of Human and Mouse Genome Containing Class MU Glutathione Transferase", University of Oklahoma.
Xiaohong Hu, April 2000. "Sequence and Analysis of the region in mouse chromosome 16 which is syntenic to DGCR of human chromosome 22", University of Oklahoma.
Michael Schade, May 2001, "Shotgun Sequencing and DNA Analysis of Bacillus stearothermophilus Strain 10 Genome", University of Oklahoma
Laura Hern, May 2001, "Shotgun Sequencing and Anaysis of the Aflatoxin Pathway Gene Cluster in Aspergillus Flavus", University of Oklahoma
Christina M. Barnes, May 2002, "Shotgun Sequencing and analysis of Bacillus stearothermophilus Strain 10 Genome", University of Oklahoma
Bart Ford, May 2002, "Orthologous Genomic Regions of the c57BL/6J Black Mouse, 129/SvEvTac White Mouse and Human Chromosome 22", University of Oklahoma.
Terrell E. Swanson, December 2002, "Sequencing and Analysis of the MAT-1 locus in Ustilago hordei", University of Oklahoma
Purvi Shroff, May 2002, "DNA Sequencing Strategy for Mouse Close rp23-352p20", Univeristy of Oklahoma.
Colleen Wilson, May 2002, "Sequence Analysis of Mouse Genome Containing Genes Related to Bone Density", University of Oklahoma.
Julia Kim, May 2002, "The Shotgun Sequence and Analysis of a Candidate Gene Responsible for Fusarium wilt in Cier arietinum", University of Oklahoma
Graham Wiley, May 2003, "The Completed Sequence of the Sorghum bicolor Chloroplast Genome: Annotation and Comparison with Other Chloroplast Genomes", University of Oklahoma
Guoya Mo, December 2003. "Sequencing and Analyzing Clone mtgsp_003g10 in Medicago Truncatula Genome Chromosome 5", University of Oklahoma.
Katherine Cody Ashmore, May 2004, "Sequencing and Annotation of the Xcat Mouse Mutation with Comparison to the Human Syntenic Region", University of Oklahoma.
Tessa Leigh Manning, May 2004, "Annotation and Comparison of the Medicago Truncatula Genome with Other Plant Genomes", University of Oklahoma.
Aleksandra Stojanoska, May 2005, "Medicago truncatula: Shotgun sequencing and analysis of Chromosome 6 - Clones mth2-172h20 and mth2-189o22", University of Oklahoma.
Amy Kathryn Dickey, May 2006, "Medicago truncatula: Shotgun Sequencing and Analysis of Chromosome 6 Clones mth2-171k9 and mthr-180f11" University of Oklahoma.
Janice Te, May 2006, "Shotgun Sequencing and Analysis of Bacterial Artificial Clone mth2-10d6 from Chromosome 4 of Medicago truncatula" University of Oklahoma.
Chelsea L. McIntosh, May 2006, "DNA Sequencing of the Bacterial Artificial Chromosome mth2-45n8 From Medicago truncatula and gmw1-60n23 from Glycine max" University of Oklahoma.
Goldameir Osisanya, May 2007, "Shotgun Sequencing and Analysis of Bacterial Artificial Chromosome mth2-46m2 From Chromosome 4 of Medicago truncatula" University of Oklahoma.
Taiwo Adesoye, May 2007, "Shot Gun DNA Sequencing and analysis of Bacterial Artificial Chromosomes mth2-119h18 from chromosome 6 of the Medicago truncatula genome" University of Oklahoma.
Cristine Klatt-Lasso, May 2007, "Sequencing and analysis of Medicago truncatula BACs, mth2-39p2 and mte1-13o17, and characterization of the inositol polyphosphate kinase and phosphofructokinase genes" University of Oklahoma.

Bruce Roe, broe@ou.edu